Flavivirga abyssicola: Q4Q34_19560
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Entry
Q4Q34_19560 CDS
T09912
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fay
Flavivirga abyssicola
Pathway
fay03030
DNA replication
fay03410
Base excision repair
fay03420
Nucleotide excision repair
fay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q4Q34_19560 (ligA)
03410 Base excision repair
Q4Q34_19560 (ligA)
03420 Nucleotide excision repair
Q4Q34_19560 (ligA)
03430 Mismatch repair
Q4Q34_19560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fay03032
]
Q4Q34_19560 (ligA)
03400 DNA repair and recombination proteins [BR:
fay03400
]
Q4Q34_19560 (ligA)
Enzymes [BR:
fay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q4Q34_19560 (ligA)
DNA replication proteins [BR:
fay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q4Q34_19560 (ligA)
DNA repair and recombination proteins [BR:
fay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q4Q34_19560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q4Q34_19560 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q4Q34_19560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q4Q34_19560 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
5_3_exonuc
DUF8788
Motif
Other DBs
NCBI-ProteinID:
WVK13415
LinkDB
All DBs
Position
complement(4674644..4676641)
Genome browser
AA seq
665 aa
AA seq
DB search
MGTKELIETLRTELREHNYNYYVLDNATISDFEFDKKLKELQELEAKHPEFFDTNSPTLR
VGGEVTKNFETVVHEHRMYSLDNSYSKEDLQDWETRIKKLIDGEIQYTCELKYDGASISL
TYENGNLAKAITRGDGVQGDNVTANIKTIKSIPLQLKGTDYPAKFDIRGEIVLPFDGFNK
MNEARIEIGEEPYRNPRNTASGSLKLQDSTEVAKRPLECFLYNITGSNLNIKTQFESLEK
ARAWGFKVPSAAKLVNSIDEALEFVDYWNVNRHDLPYETDGVVIKVNGLQQQEELGYTAK
APRWAMAYKFKAEQVSTRLNSITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIE
KLDIRVGDEVYVEKGGEIIPKILGVDLAKRIHASQPTVYITHCPECETELVRQDGEAQHY
CPNYNGCKPQIIGRIQHFISRKAMDIEGLGGETVALLVNEGLISDYSDLYELTKEEVIPL
ERMAEKSADNLIQGIALSKNIPFERVLFALGIRYVGETVAKKLAKHYKSIEAIANATEED
LVNVDEIGVKIAESVSVFFKSEVNLHIIDRLKQFGVQLELSEEQLIGQTSILAGDVIVVS
GVFENVSRNELKKLIEDNGGKLSSSISSKTSYIVAGSNMGPSKKEKADKLGVPLISENEF
LQKIQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgggaactaaggaattaattgaaactttaagaacggaacttagagaacataactacaat
tactatgtacttgacaacgcaacgatttctgattttgaattcgataaaaaacttaaagaa
ctccaggaattggaggctaaacaccctgagttttttgatactaattctcctaccttaagg
gttggtggagaggtaactaagaattttgaaactgttgtacatgaacatcgtatgtattct
ttagacaattcttattctaaagaagatttgcaggattgggaaacccgtattaaaaaatta
atagatggtgagattcaatatacatgtgaattaaaatatgacggagcgtctattagttta
acttatgaaaatggtaatctggctaaggcaataacaagaggagatggcgttcaaggtgat
aatgtaactgctaatataaaaaccattaaatcaataccgttgcagcttaaaggaactgac
tatcccgcaaaatttgacataagaggcgaaattgtattaccttttgatggtttcaataaa
atgaatgaggcgcgtattgaaataggagaagagccttatagaaaccctagaaacacagct
tccggtagtttaaaacttcaggatagtacagaagtcgctaaacgtcctttagaatgcttc
ctttataatataacggggtccaatttgaatattaaaacacaatttgaaagtttagaaaaa
gcaagagcttggggctttaaagtaccaagtgcggcaaaacttgttaattctattgacgaa
gctttggagtttgtcgattattggaatgtaaatcgtcatgatttgccctatgagacagat
ggtgttgttataaaagtaaatggtttgcagcagcaagaagaattaggctatacagcaaaa
gctccaaggtgggcgatggcttataaatttaaagcagagcaagtttcaacaagattaaat
agtattacctatcaagtaggacgtacaggggcaattacgccagttgctaatttagaacct
gtagaattagcaggaaccactgtaaaacgggcatcgttgcataatgcggaccaaattgaa
aaattagatatccgagtaggggatgaagtttatgttgaaaaaggaggagagattatccca
aaaatccttggggtagatttagctaagagaattcatgcttcccaaccaacagtatatatt
acgcattgtccggaatgtgaaactgaacttgtgagacaggatggtgaggctcagcactat
tgccctaactataacggctgtaaaccacagattattgggcgaattcaacactttatatcg
aggaaagctatggatattgaaggactgggaggagagactgttgctcttttggtaaatgaa
ggtttgatctctgattattcagatttgtatgaattaaccaaagaagaagttatcccttta
gaacgtatggcagaaaaaagtgcagataatttgattcaagggatagcactttctaaaaat
attccttttgaacgtgttctgtttgctttagggattcgatatgtaggagaaacggttgct
aaaaaattggctaaacattataaaagtattgaagcgatagctaatgctacagaagaggat
ttggttaatgtcgatgaaataggagttaagattgcagaaagtgtaagtgtattttttaaa
tcggaagtaaacttgcatataattgataggttaaagcagtttggagttcaattagaatta
tctgaagaacaattaattgggcaaacaagtatattggctggagatgtcattgttgtttct
ggtgtttttgaaaatgtctcgcgaaatgagcttaaaaaactcatcgaagataacggaggc
aagttaagtagttctatttcttctaaaacaagttatatcgtagcagggagtaatatgggg
cctagcaaaaaggaaaaagcagacaagcttggtgtaccattaattagcgagaatgaattc
ttacaaaaaatacagtaa
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