Flavobacteriaceae bacterium 3519-10: FIC_01384
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Entry
FIC_01384 CDS
T00953
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03030
DNA replication
fba03410
Base excision repair
fba03420
Nucleotide excision repair
fba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIC_01384
03410 Base excision repair
FIC_01384
03420 Nucleotide excision repair
FIC_01384
03430 Mismatch repair
FIC_01384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fba03032
]
FIC_01384
03400 DNA repair and recombination proteins [BR:
fba03400
]
FIC_01384
Enzymes [BR:
fba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIC_01384
DNA replication proteins [BR:
fba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIC_01384
DNA repair and recombination proteins [BR:
fba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIC_01384
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIC_01384
MMR (mismatch excision repair)
DNA ligase
FIC_01384
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIC_01384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DNA_pol_lambd_f
5_3_exonuc
Dna2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACU07832
UniProt:
C6X5Z4
LinkDB
All DBs
Position
1501463..1503466
Genome browser
AA seq
667 aa
AA seq
DB search
MPENIQQKIDALRKEIHQHNYSYYSLDEPTISDFEFDLKLKELQDLELQFPEFYDNNSPT
LRVGGQITKNFPTVQHQFRMFSLDNSYDFNDLEEWEKRIRKTLNEPVEFVAELKYDGASI
SILYENGKLNEAVTRGDGFQGDEITSNVKTISQIPMQLHGDFPERFFMRGEIYLTHQNFE
KINKRREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQFISENTAAQTHWELLQ
KAKSWGFRISDQAKLCADLDEVKAFINFWDENRHTLAFDIDGIVVKVNDLAQQRVLGYTA
KSPRWAMAYKYKAEKAETELQTVTYQVGRTGAITPVANLKPVLLAGTVVKRASLHNEDII
RKLGLYEHDFVYVEKGGEIIPKIVGVNLAKRNPANAEIQYIKNCPECSTALIRVEDQAIH
FCPNELHCPPQVIGRMIHYVSRKALNIENLGSETIEQLYREKLVENPADFYALTKEQLLP
LERMAEKSAQNIITGIEKSKEIAFEKVLFGIGIKHVGETVAKKLVKNFNSIDDLKNATAA
ELVQVEDIGLKIAESITEFFKNPENVLMIERLKSYGVKLEKGADTHEVLSNALDGKTFLF
TGKLSLFTRDDAEEMVEKHGGKNISAVSKNLDFLVVGEKAGSKLKKAQEIGTITILDEQQ
FLDLLQA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatattcagcaaaaaatagatgcactccgcaaggaaatccatcagcacaat
tacagctattattcccttgatgagccgacgatttccgattttgaattcgatttaaaactt
aaagaacttcaggatctcgaactgcagttccccgaattttacgacaataactctcctact
ttgcgcgttggcggacaaatcacaaaaaacttcccgacggtgcagcatcagttccggatg
ttttcactcgataattcctatgattttaacgatcttgaagaatgggaaaaacgcatcaga
aaaactcttaacgaaccggtagaatttgttgcagaattaaaatacgacggcgcatcgatt
tcaattttatatgaaaatgggaaacttaacgaagcggttacccgtggcgacggttttcag
ggcgacgaaataacctcaaacgttaaaaccatctcgcaaatcccgatgcagctgcacggc
gatttccctgaaagattttttatgcgcggtgagatttatcttacccatcagaatttcgaa
aaaataaataagcgccgcgaagaagaaggcctggatccgtttatgaatccacgcaacacc
gcttccggatcactaaaaatgcaggattctggcgaagtgcgcaaacgcggactttctgcg
gtactttatcagtttatttctgaaaacacggctgctcaaactcattgggaacttctacaa
aaagctaaatcgtggggtttcagaatttccgatcaggcaaaactgtgcgcagatcttgat
gaggtaaaggcattcattaatttttgggatgaaaaccggcatacactcgcattcgatatt
gacggtatcgtagtgaaggtgaacgatttagcacaacaacgcgtcctgggctataccgca
aaatcgcctcgctgggcaatggcttataaatacaaggccgaaaaagctgaaactgaactt
cagacggtcacttatcaggtcggaagaaccggcgccataacgcccgttgcaaacctaaaa
cccgtacttttggccgggaccgttgtgaagcgtgcaagtcttcataacgaagacatcatc
agaaaactcgggctttatgaacatgactttgtgtatgtggaaaaaggcggcgaaattatt
ccgaagattgtaggtgtaaatcttgcgaagagaaatcccgcgaatgccgaaatccagtac
atcaaaaactgcccggaatgcagcacagcactgatccgcgtcgaagatcaggcgatccat
ttctgcccgaacgagctgcactgtccgccacaggtaatcggaaggatgattcattatgtt
tcaagaaaagctttaaatatagaaaatctgggaagcgaaacgattgaacagctgtatcgc
gaaaaactcgttgaaaaccccgcagacttttatgcactgactaaagaacagcttttgcca
cttgagcggatggccgaaaaatctgcccagaacattataacaggtattgaaaaatcaaaa
gaaattgcatttgaaaaggtgcttttcgggattggaataaagcatgtgggcgaaacggtt
gctaaaaaactggttaagaatttcaattcgattgatgacttaaaaaatgcgacagctgca
gaacttgttcaggttgaagatatcggcctgaaaatcgctgaaagcatcaccgaatttttt
aagaatccagaaaatgtcttgatgatagagcggctgaaatcttacggagttaagctcgaa
aaaggcgccgacacccacgaagtgcttagcaatgcgctggatggaaagacctttcttttc
accggaaaactatctcttttcacgcgtgatgatgccgaagaaatggtagaaaagcacgga
ggtaaaaatatttcagcggtatctaaaaaccttgattttcttgtagtgggcgaaaaagcc
ggcagcaaacttaaaaaagcacaggaaatcggcaccatcaccattctggacgaacagcag
tttttggatttacttcaagcctga
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