Aureibaculum algae: FF125_16885
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Entry
FF125_16885 CDS
T06009
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fbe
Aureibaculum algae
Pathway
fbe03030
DNA replication
fbe03410
Base excision repair
fbe03420
Nucleotide excision repair
fbe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FF125_16885 (ligA)
03410 Base excision repair
FF125_16885 (ligA)
03420 Nucleotide excision repair
FF125_16885 (ligA)
03430 Mismatch repair
FF125_16885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fbe03032
]
FF125_16885 (ligA)
03400 DNA repair and recombination proteins [BR:
fbe03400
]
FF125_16885 (ligA)
Enzymes [BR:
fbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FF125_16885 (ligA)
DNA replication proteins [BR:
fbe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FF125_16885 (ligA)
DNA repair and recombination proteins [BR:
fbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FF125_16885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FF125_16885 (ligA)
MMR (mismatch excision repair)
DNA ligase
FF125_16885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FF125_16885 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
RNA_ligase
HNOB
DUF7008
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QCX40036
UniProt:
A0A5B7TY01
LinkDB
All DBs
Position
complement(3982537..3984534)
Genome browser
AA seq
665 aa
AA seq
DB search
MSSIQEQLIQLREELREHNYNYYVLDNATISDYDFDMKLKTLQDLEAKHPEFFDASSPTQ
RVGGEVTKNFETIAHKNRMYSLSNSYSKEDLLDWEKRVQKILGTEAVEYTCELKYDGASI
NLTYEKGQLIKAVTRGDGFQGDNVTANIKTIRSIPLQLKTDFVTDFEIRGEIILPLEGFS
KMNEARVEAGDDPYMNPRNTASGSLKLQDSAEVAKRPLDCLLYHVVAERLPFKTHYEALE
NAKKAGFKIPDTIKVAKSIDEILDYINLWDTQRFKLPYETDGVVIKVNSLHQQDELGYTA
KAPRWAIAYKFKAEQKSTVLNSISYQVGRTGAITPVANLEPVELAGTIVKRASLHNADQI
EKLDIRVNDTVFVEKGGEIIPKVVGVDLTKRPADSQPTVYATHCPECNTELVRTEGDAKH
YCPNEYGCPTQIAGRIQHFISRKAMDIEGLGGETVALLAKENLISNYADLYELKTEQIIP
LERMAEKSAENMIKGIEKSKEIPFERVLFALGIRFVGETVAKKLAKYFKNIDSLLNASFE
ELIAVDEIGDRIAQSIIDFSNNPLNIDLVNRLKSYGVQMELSAKALENQTDELQGKIFVV
SGVFTKMSRNELKKSIEDNGGKVSSSISKKTNYIIAGDNMGPSKRTKAEDLGIPIISEDD
YIAMI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaattcaagaacaacttatacaactccgagaagaattacgtgaacataattat
aactattatgtgttggataatgccaccatttctgattatgattttgatatgaagctcaag
acattgcaagacttggaggcaaagcatcctgagttttttgatgccagctcacctacgcag
cgtgtaggtggtgaggttactaagaattttgaaacgattgctcataagaatagaatgtat
tctttaagtaatagttattctaaagaagacttattggattgggaaaaacgcgttcaaaaa
atattaggaactgaggcggttgaatatacttgtgagcttaaatatgatggagcatctata
aatttaacctatgagaaaggacaattaataaaagccgtaactagaggtgatggatttcaa
ggagataatgttactgcaaacattaaaaccatacgctcaattccgttgcaattaaaaact
gattttgtaactgattttgagattagaggtgaaattattttaccgctagagggtttttcg
aaaatgaatgaggctagggtagaagccggtgatgatccttatatgaacccaagaaacacg
gccagtggtagtttaaagctacaagatagtgccgaggtagctaaacgaccattagattgc
ttgctatatcatgtggtggctgaaagattaccctttaaaacccattatgaagccttagaa
aatgctaaaaaagcgggctttaaaattccagatactataaaagtagcgaagtctatagat
gaaatattggactatataaatttatgggatacgcagcgttttaagttgccttatgaaacc
gatggtgtggtaataaaagtaaactcgttacatcagcaagatgaattagggtatacggca
aaagcaccacgttgggcaatagcctataagtttaaagcggagcaaaaaagtaccgtttta
aatagtatttcttatcaagttggtagaactggagccataacaccggttgctaatttagaa
ccggttgagttagcaggtaccatcgtaaaacgtgcttcgttgcataatgctgaccaaatt
gaaaaactagatatacgtgttaatgatactgtgtttgtagaaaaaggcggtgaaattatt
cctaaagtagttggggtagatttaacaaaaagacccgcagattctcaacctacagtttat
gctacacattgtccggaatgcaatacggagttagtaagaactgaaggagacgccaaacac
tattgccctaatgaatatggttgtccgacacaaattgcaggtagaattcaacattttatc
agtagaaaagccatggatattgaaggcttgggtggagaaacggttgccttattggctaag
gagaacttaatttcaaattatgcagacttgtatgagttaaaaacggaacaaattattccg
ttagaaagaatggctgaaaaatctgctgaaaacatgattaaaggaattgaaaaatcaaaa
gaaattccatttgaacgtgttctatttgctttaggaattcgatttgtgggtgaaacagtt
gctaaaaaattggctaaatattttaagaacattgatagtttactcaacgcaagttttgaa
gaattaatagccgttgatgaaataggagacagaatagctcaaagtattattgatttttca
aacaaccctcttaatattgacttggtaaatagattaaaaagctatggtgtgcaaatggaa
ctatccgccaaggcgttggaaaatcagacagatgaattgcaaggaaagatttttgtagtg
tcaggtgtttttacaaaaatgagtagaaacgaacttaaaaaatcaattgaagataatggt
ggtaaagtatcaagctccatttctaaaaagaccaattatattattgcaggtgataacatg
gggccaagtaaacgtaccaaagcggaagatttaggtattcctattatttcagaagatgat
tatatagcgatgatataa
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integrated database retrieval system
