Ferrimonas balearica: Fbal_2417
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Entry
Fbal_2417 CDS
T01318
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fbl
Ferrimonas balearica
Pathway
fbl03030
DNA replication
fbl03410
Base excision repair
fbl03420
Nucleotide excision repair
fbl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fbal_2417
03410 Base excision repair
Fbal_2417
03420 Nucleotide excision repair
Fbal_2417
03430 Mismatch repair
Fbal_2417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fbl03032
]
Fbal_2417
03400 DNA repair and recombination proteins [BR:
fbl03400
]
Fbal_2417
Enzymes [BR:
fbl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fbal_2417
DNA replication proteins [BR:
fbl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fbal_2417
DNA repair and recombination proteins [BR:
fbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fbal_2417
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fbal_2417
MMR (mismatch excision repair)
DNA ligase
Fbal_2417
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fbal_2417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
Bep_C_terminal
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ADN76619
UniProt:
E1SMV0
LinkDB
All DBs
Position
complement(2686300..2688357)
Genome browser
AA seq
685 aa
AA seq
DB search
MCFLPPKNDMSQAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPA
LRQPDSPTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLGSGDIQYCA
EPKLDGIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPALLEVRG
EAFMPKAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLDSRITANRPLAFYAYAVGVVEG
IDTAMADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEIDGVVIK
VDSLAQQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEPVFVGG
VTVSNATLHNADEIARLGVKIGDTVIIRRAGDVIPQIVSVVAERRPDDARDIEFPSACPV
CASKVERFEGEAVARCSGGLFCEAQRKEAIKHFASRKALDVDGLGDKLVELMVDRELVAT
PADLFTLSASRLTMLPRMGTKSAQNLVAALDQARTTTLPRFLYALGIREVGEATAANLAR
HFQTLEALMAADTDALIEVDDVGEVVAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIE
AVAEEAQPLKGQTWVLTGTLSQMGRSEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKL
TKATDLGVPVLDEDGLVALLAQYNG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtttcttaccgccgaagaacgacatgagccaagccaaagaccgcattgaacagctc
agccagttgctgaacgattacaaccaccagtactacgtgctggacaacccctccgttccg
gatgcggaatatgaccgcctgatgcgcgaactgcaggccctggaagcggaacatccagcg
ctgcgtcagcccgattccccgacccagcgggttggcggtgcgccggcaggccagttccag
tcggtagcccacctcaagccgatgctgtccctcgataacgccatgaacgaggaggagttc
tccgccttccatcagcgcctggcggaccgcctcggcagcggcgatatccagtactgtgct
gagccgaagctggatggcattgcggtcagcctgatctaccgtgatggtctgctggagcgc
gcggcaacccgcggtgacggcaccaccggcgaagagatcacgactaatgtccgcaccatc
aagtcggtgccgctgcgtctcagtggcaagggctacccggccctgctggaggtgcgtggt
gaagcctttatgcccaaggccggattcgaagcgatgaacgccaaggcgatggccgccggt
gagaaaacctttgtgaacccgcgcaatgcggcagcgggcagcctgcgtcaactcgacagc
cgcatcaccgccaaccggccgctggcgttctacgcctatgcggtgggcgtggttgagggc
atcgatacggcgatggccgacagccacagtggccagttggcccagttggcccagtgggga
ctgccggtcagccccatcgtggaaaccgccgctggcgaagctgccgcgctggattacttc
cgccgcattggtcagcagcgtccggacctgccctatgagatcgacggggtcgtgatcaag
gtggacagcctggcgcaacaggagcaactgggttttgtggcccgcgccccccgttgggcc
atcgcctgtaagttcccggcccaagaggagatgacgctgctcaaggacgtggagtttcag
gtgggccgcactggcgccgttaccccggtggcgcgactggagccggtgtttgtgggcggg
gttaccgtttccaacgccaccctgcacaacgccgatgagattgcgcgtcttggcgtcaag
attggcgacacggtgatcatccgtcgtgccggtgatgtgattccgcagatcgtctccgtg
gtggccgaacgccgtccggatgacgcccgcgatatcgaattccccagcgcttgtccggtc
tgcgcgtccaaagtggaacgctttgagggcgaagccgtggctcgctgttccggtggcctg
ttctgcgaagcccagcgcaaggaagcgatcaagcacttcgcctcccgcaaagcgttggat
gtggatggccttggcgacaagctggtggagctgatggttgaccgtgagctggtggccacc
ccggccgatctgttcaccctgtcggcctcccgcctgaccatgctgccgcgcatgggcacc
aaatctgcgcagaacctggtggcggcgttggatcaagcccgcaccacgaccctgccacgc
ttcctctatgcgctggggatccgcgaagtgggcgaggccacggccgctaacctggcccgt
cattttcagactctggaagcgctgatggccgctgataccgacgcgttaattgaagtggat
gatgtgggggaagtggtggccaagcacgtgtattacttcttccgtcagccccataacctg
gaggttattcaggcgctgaccgacaccgaaggcgccaacgtgcactggcccgccattgag
gcggttgctgaagaggcgcagccgctcaaagggcagacctgggtgctgaccggcacgctc
agccagatgggccgaagcgaggccaaagcggcgctggaagccctgggcgccaaagtcagt
ggcagtgtgtccaaaaacaccgacacgctggtggcgggcgaaaaggccgggtcgaagctg
accaaggccaccgatctcggggttccggtgctggatgaggatggcctggtggccctgctg
gcccagtacaacggctga
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