Candidatus Falkowbacteria bacterium NC_groundwater_1683_Pr3_B-0.1um_40_26: HY931_02205
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Entry
HY931_02205 CDS
T10142
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fbn Candidatus Falkowbacteria bacterium NC_groundwater_1683_Pr3_B-0.1um_40_26
Pathway
fbn03030
DNA replication
fbn03410
Base excision repair
fbn03420
Nucleotide excision repair
fbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HY931_02205 (ligA)
03410 Base excision repair
HY931_02205 (ligA)
03420 Nucleotide excision repair
HY931_02205 (ligA)
03430 Mismatch repair
HY931_02205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fbn03032
]
HY931_02205 (ligA)
03400 DNA repair and recombination proteins [BR:
fbn03400
]
HY931_02205 (ligA)
Enzymes [BR:
fbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HY931_02205 (ligA)
DNA replication proteins [BR:
fbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HY931_02205 (ligA)
DNA repair and recombination proteins [BR:
fbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HY931_02205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HY931_02205 (ligA)
MMR (mismatch excision repair)
DNA ligase
HY931_02205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HY931_02205 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QQG53023
LinkDB
All DBs
Position
complement(456476..458614)
Genome browser
AA seq
712 aa
AA seq
DB search
MKKEAAKIRIEKLKAEINFHRYNYHVLDRETITPAALDSLKNELFSLENEYPDLITPDSP
TQRVAGQPLAKFVKTKHSRPMISLFDAFSESDMGAWQERNENYLKRAWNQEYYCELKLDG
LAISLHYESGRLQVAATRGDGVTGENVTANVKTIQSIPLALRRPTAAELKAAGFSTGEAE
TIFGLLDNGIIEARGEAIMTKKVLHDLNKKYESLGKPLLANARNGVAGSIRQLDSKITAE
RHLDFYAYDLLLGDYERGEVVNTKEQLDSLLRLLGLKVLPDNAVCKNLAAVFNFFNGVGQ
RREKLAFDIDGIVVKANDLKMWPVLGIVGKAPRYMMAYKFPAEQATTKVNNIVWQVGRTG
ALTPTAILEPVSVGGATISRSTLHNFDEIQRLDLRLGDTIVIERSGDVIPKVISVLKNLR
TGKEKKITPPAICPMCGGRVEQVDDEVAYRCLNKECYAVSLRQIEHFVSRGAADFDGLGP
KLIEQFMAAGLIKDAADIYAIDETRKSDLLSLERFAEKKADNVIAIINAKRELDLARFIY
SLGIRHVGEETARTLAAMIAGNLYTEKKQPVAPSALILAFQSKSREDLANMEDIGPVVAE
SIYSFWHDAKNLALLKKFEQNGVKIIITAFEKSGSASSKLAGKTFVLTGSLLGLTRDAAK
DKIRALGGKTTESVTKNTDYVVAGENSGSKYDKAKELGVMILNEEEFLKMIK
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagaagccgccaaaattagaattgaaaaattaaaagctgaaataaattttcat
cgctataattatcacgttttagaccgggaaacaataactcctgcggctttggatagctta
aagaacgaattattttctttggaaaacgaatatcctgatttaattactccggattcgcca
actcagcgcgtcgctggccagccactggcaaaatttgtgaaaactaaacattcgcggccg
atgatttctttattcgatgctttttccgaaagtgatatgggcgcttggcaggagcgcaac
gaaaattatttaaagcgcgcttggaatcaagaatattattgcgaattaaaattggacggc
ctggctatcagtctgcattatgagtccggccgcttgcaagtggcggcgactcgcggcgat
ggagtgaccggtgaaaatgtgacggcgaatgttaagaccatccaaagcattcccttagcc
ttaagacgcccgacagcagccgaacttaaggcggcaggattttcgacgggtgaagccgaa
actattttcggcttattggataatggaattattgaagcgcgcggggaagcgattatgacc
aaaaaagttttgcatgatttgaataaaaaatatgaatctctaggcaaacctttattggcc
aatgcccggaacggcgtggccggctctatccgccaactggactctaaaattaccgctgaa
cgccacttagatttttatgcttatgatttattgctgggcgattatgagcgcggggaagtc
gtaaatactaaagagcagttagattctttgctgcgtcttttaggtttgaaggttttgccg
gacaacgcggtttgtaaaaatttagctgcagtctttaatttttttaacggtgttggccag
cggcgggaaaaattagcttttgatattgacgggattgtggttaaggcaaatgatttgaag
atgtggccggttttagggattgtcggcaaggcgccacgctatatgatggcttataaattc
ccggctgagcaagcaaccactaaggttaataatattgtttggcaagtcgggcgcacgggc
gcgctcacgccgaccgctattttagaaccggtatcagtcggcggcgcgacaatcagccgt
tcaactttacataattttgatgagattcagcgcttagatttgcgcttaggagatacaatt
gtgattgaacgttccggggatgtaattccaaaagtgatttcggttttaaaaaatttgcgg
accggaaaagaaaaaaagattacgccgccggcaatttgcccgatgtgcggcggccgagtt
gagcaagttgacgacgaagttgcttatcgctgtttaaataaagaatgttatgcggtcagc
ttgcgccagatagaacattttgtttcccgcggggccgctgattttgacggcttgggaccg
aaattgattgaacaatttatggcagccggcttaattaaagatgcggctgatatttatgct
atcgatgaaactagaaagtcagacctattaagtttagaaagatttgccgagaaaaaagcc
gataatgtaatcgcgataattaacgctaagcgtgaattggacttggcgcgttttatttat
agtttaggaattaggcatgtgggggaagagacggcgcggacgctggcggcaatgattgct
ggaaatttatatacagaaaaaaaacagccagtagcgccaagtgctttgattttagctttt
caatccaagagcagggaagatttagcaaatatggaagatatcggcccggtggtcgccgaa
agtatttatagtttttggcacgatgcgaaaaatttagcgctcctgaaaaaatttgaacag
aacggcgttaaaataattattaccgcttttgaaaaaagtggctcagccagcagtaagtta
gcgggtaaaacttttgttcttaccggctcattgcttggtttgacacgtgatgccgcaaaa
gataaaataagagcattaggcggcaaaacaactgaaagcgtgacaaaaaacactgattat
gttgtcgctggtgaaaattccggttctaagtatgacaaggcgaaagagttgggggttatg
attttaaatgaagaagaatttttgaaaatgattaaataa
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