Faecalibacter bovis: J9309_11745
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Entry
J9309_11745 CDS
T07705
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fbo
Faecalibacter bovis
Pathway
fbo03030
DNA replication
fbo03410
Base excision repair
fbo03420
Nucleotide excision repair
fbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J9309_11745 (ligA)
03410 Base excision repair
J9309_11745 (ligA)
03420 Nucleotide excision repair
J9309_11745 (ligA)
03430 Mismatch repair
J9309_11745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fbo03032
]
J9309_11745 (ligA)
03400 DNA repair and recombination proteins [BR:
fbo03400
]
J9309_11745 (ligA)
Enzymes [BR:
fbo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J9309_11745 (ligA)
DNA replication proteins [BR:
fbo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J9309_11745 (ligA)
DNA repair and recombination proteins [BR:
fbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J9309_11745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J9309_11745 (ligA)
MMR (mismatch excision repair)
DNA ligase
J9309_11745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J9309_11745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
HVO_2753_ZBP
Rad9_Rad53_bind
Auto_anti-p27
RNA_ligase
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
QTV05430
LinkDB
All DBs
Position
complement(2438634..2440631)
Genome browser
AA seq
665 aa
AA seq
DB search
MNIQERILALREEISQHNYNYYVLDNPSISDFEFDLKLKELIKLEQENPLFFDVNSPSQR
VGGMITKNFPTIQHEFRMYSLDNSYSVEDLQDWEKRIEKQLGDEKVEFVCELKYDGASIS
IYYENGELKQAVTRGDGYQGDEITNNIRTIQSIPLKLKGNFPERFYMRGEITIPLDTFKL
INEERANNGLELYANPRNTASGSLKLQDNTEVSKRGLQCFPYYFVGNNLPYATQWDMLQG
ANELGFKVPNTSKLCSSLEEVLEFVNYWDTERKNLPYETDGIVIKVNSLAQQEELGYTAK
APRWAMAYKFKAEAAETELLSIDYQVGRTGAITPVANLAPVSLAGTIVKRASVHNEDIIK
KLDIRIGDKVYVEKGGEIIPKIVGVNTDVREPGTQEIEFIKECPSCGTELIRKEGEAQHY
CPNDTGCEPQIIGKLEHFISRKAMNIDSIGGETAALLFQAGLVNNVADFYTLQKEDILPL
DRMAEKSAQNIINSVEKSKEQPFEKVLYAIGIRHVGETVAKKLVKHFQNIDRLMAATMEE
LVSVGDIGEKIAISIKDYFKDEDNLALIERLRAYGLNFEIGEEAKPLSDALEGKTFLFTG
TLTKFTRTEAQKMVEANGGKNISAVSKNLNYLIAGEKAGSKLKKAEEIGTVVVLTEDEFL
TMING
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaatattcaagaaagaatccttgctttacgcgaagaaatcagtcaacataattacaat
tactacgttttagataatccttcaatttctgattttgaatttgatttgaaattgaaagaa
ttgataaaattagaacaagaaaatccactattttttgatgtcaattcaccttctcaacgt
gttggtggtatgatcactaaaaatttcccaacgattcaacacgaatttagaatgtattct
ttagataattcttattcagttgaagatttacaagattgggaaaaacgtatcgagaaacaa
ttaggagacgaaaaagtagaatttgtttgtgaattaaagtatgatggtgcgtctatttct
atttattacgaaaatggagaattgaaacaagccgtaactcgtggtgatggttatcagggt
gacgagattacaaataacattcgtacaattcaatccatacctttaaaattaaaaggcaat
tttccggaaagattttatatgcgaggcgaaattacgattcctttggatacgtttaaattg
attaatgaagaacgtgcgaataatggattagaattatatgccaatcctaggaatacagcc
tcaggatctttaaaattacaagataatactgaagtatctaaacgtggtttacaatgtttt
ccgtattattttgtaggtaacaatttaccatatgctacacaatgggatatgctacaaggt
gcaaatgagcttggctttaaagttccgaatacgtcaaaattatgttcttctttagaggaa
gttttagagtttgtgaattattgggatactgaacgtaaaaatttaccttacgaaactgac
ggaattgttataaaagttaattcattagcacaacaagaagaattaggatatacagctaaa
gctccacgttgggcaatggcttataaatttaaagccgaagctgccgaaactgaattatta
agtatcgattaccaagttggtcgtacaggagcaattacacctgttgctaatttagcgcct
gtatcattagctggaacgatcgtaaaacgtgcatcagttcacaatgaagatattattaag
aaattggatattcgcattggagataaggtttatgtggaaaaaggtggagaaattatacca
aaaattgttggagtaaatacagatgttcgcgaacctggaactcaagaaatcgaatttatt
aaagaatgtccgtcttgtggtacagaattgattcgtaaagaaggtgaagcgcaacattat
tgtccgaatgatacgggttgtgaaccacaaattatcggaaaattagaacattttatttct
cgtaaagcgatgaatattgatagtattggtggcgaaactgcggctctactattccaagct
gggttagttaataacgtagctgatttctatacgttacaaaaggaagatattttaccattg
gatcgaatggctgaaaaatctgctcaaaatattattaattcggttgaaaaatcgaaggaa
caaccttttgagaaagtgctttatgcaataggaatccgacacgtaggtgaaacggttgcc
aagaaattagtaaaacattttcaaaatattgaccgattaatggctgctacgatggaagaa
ttagtttcggttggagatattggagaaaaaattgcgatttcaatcaaagattactttaaa
gatgaagataatttagctttaattgaacgattacgtgcatacggattaaattttgaaatt
ggcgaagaagctaaaccattatcagatgcattagaaggaaaaactttcttatttacagga
actttaacaaaatttacacgaactgaagcgcagaaaatggtcgaagccaacggaggaaaa
aatatatctgccgtttctaaaaacttaaattacttaattgcaggagaaaaagctggaagt
aaattaaagaaagctgaagaaattgggacagttgtagttttaactgaagatgaattttta
acaatgattaacggataa
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integrated database retrieval system
