Firmicutes bacterium ASF500: N510_000396
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Entry
N510_000396 CDS
T10173
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fbs Firmicutes bacterium ASF500
Pathway
fbs03030
DNA replication
fbs03410
Base excision repair
fbs03420
Nucleotide excision repair
fbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N510_000396 (ligA)
03410 Base excision repair
N510_000396 (ligA)
03420 Nucleotide excision repair
N510_000396 (ligA)
03430 Mismatch repair
N510_000396 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fbs03032
]
N510_000396 (ligA)
03400 DNA repair and recombination proteins [BR:
fbs03400
]
N510_000396 (ligA)
Enzymes [BR:
fbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N510_000396 (ligA)
DNA replication proteins [BR:
fbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N510_000396 (ligA)
DNA repair and recombination proteins [BR:
fbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N510_000396 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N510_000396 (ligA)
MMR (mismatch excision repair)
DNA ligase
N510_000396 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N510_000396 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
Nlig-Ia
IBR_2
RUBY_RBDX
DZR_2
Motif
Other DBs
NCBI-ProteinID:
USF25484
LinkDB
All DBs
Position
393356..395329
Genome browser
AA seq
657 aa
AA seq
DB search
MDDFAEIEALRRELTRAGYEYYVLDNPTMSDYDYDHKLRRLEELEAAHPETVTPDSPTQR
VGGQALEAFTQVRHQVPLESLQDVFDFAELEAFDQRVRGAVPNPEYVVEPKVDGLSVALE
YEDGLFVRGATRGDGQVGEDVTENLRTVRSIPLKIPNAPPRLIVRGEVYMPKKVFHALNE
ERERRGEALFANPRNAAAGSLRQLDPKVAASRRLDIAVFNIQWAEGETFSTHLETLNYLG
EKGFKVIPHYSCSQVSQVTGRIGEIGDGREAFPFDIDGAVIKLNSLSDREILGSTAKFPR
WAAAYKYPPEVKPAQVLDIVVQVGRTGVLTPKASLTPVQLAGTTVTNATLHNQDFITEKD
IRIGDTVLVRKAGEIIPEVLSVVGEKRPEGTEPYLLPKACPVCGAPVERDEDGAHTRCTG
AECPAQLLRNLAHFASRDAMDIEGLGIAVVENLVGAELVKTPGDLYFLKEEDVAKLDRMG
KRSAHKLLAALEKSKEQDLSRLIYAFGIRQVGQKAGKVLAARFQTLENLQNATLEELTAV
DDIGEITAQSVLDWMASPQSRHLIDRLREAGVNMTAAEQGSDQRFAGMTFVLTGALEKFT
RDEASEMIEARGGKASGSVSKKTTYVVAGEAAGSKLRKAQELGIPVLTEDEFLELLK
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttgcggaaattgaggccctgcgccgggagctgacccgggcgggctatgaa
tattatgtgctggacaaccccaccatgtccgactacgactacgaccacaagcttcgccgc
ctggaggagctggaggcggcccacccggagacggtcacccccgactcgcccacccaacgg
gtggggggacaggccctggaggctttcacccaggtccggcaccaggtcccactggagtcc
ctccaggatgtgttcgacttcgccgagctggaggccttcgaccagcgggtgcggggggcg
gtccccaacccggagtatgtggtggagcccaaagtggacgggctgtcggtggcgctggag
tacgaggacggcctctttgtccggggcgccacccgtggggacggccaggtgggggaggac
gttaccgagaacctgcgcaccgtccggtccatccctctgaaaattcccaacgcgccgccc
cggctcatcgtccggggagaggtgtatatgcccaaaaaggtgttccacgccctgaacgag
gagcgcgagcgcaggggagaggccctcttcgccaacccccggaacgccgccgccggctcc
ctgcggcagctggaccccaaggtagccgcctcccgcaggctggacatcgcggtgttcaac
atccaatgggcggagggagagaccttctccacccacctggagacgctgaattatttgggg
gaaaagggctttaaagtaattccgcattacagctgttctcaggtctcccaggtcaccggg
cgaatcggcgagatcggggacgggcgggaggctttcccctttgatattgacggcgcagtt
ataaagctaaacagcttgtcagatcgtgagattctagggtctaccgccaaatttccccgg
tgggccgccgcctataagtaccctccggaggtcaagcccgcccaggtgctggacattgtg
gtccaggtggggcggactggggtgctcacccctaaggcgtcgcttacccccgtccagctg
gcgggcaccaccgtcaccaacgccaccctccacaaccaggactttatcaccgagaaggac
atccgcattggggacaccgtcctggtgcgcaaggcgggggagatcatccccgaggtgctg
tcggtggtaggggagaagcggcccgaggggacggagccctacctccttcccaaggcctgc
ccagtctgcggggccccggtggaacgggacgaggacggggcccacacccgctgcaccggg
gcggagtgccccgctcagctgctgcgcaatctggcccacttcgccagccgggacgccatg
gacatcgagggtctgggcatcgccgtggtagagaatctggttggggctgaactggtgaaa
acgccgggagatttgtactttttaaaggaggaggacgttgccaagctggaccggatgggc
aagcgctccgcccacaagctgttggccgctctggagaagtccaaggagcaggacctgtcc
cggctgatctacgctttcggtatccgtcaggtggggcagaaggcgggcaaggtcctggcc
gctcgcttccagacgctggaaaatctgcaaaacgccaccctggaggagctcaccgccgtg
gacgacatcggggagatcaccgcccagagcgttctggactggatggcaagcccccagagc
cggcacctgatcgaccggctgagggaggccggcgtcaacatgacggcggcggagcagggg
agcgaccagcggtttgccggcatgacctttgtcctcaccggggcgctggagaaattcacc
agggacgaggccagcgagatgatcgaggcccggggaggcaaggcgtccggctccgtgtcc
aaaaagaccacctatgtggtggccggagaggcggcgggctctaagctgcgcaaggcccag
gagctggggattcctgttctcaccgaggacgaatttctggagcttttgaaataa
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