Flavobacterium channae: LOS89_04710
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Entry
LOS89_04710 CDS
T08502
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcb
Flavobacterium channae
Pathway
fcb03030
DNA replication
fcb03410
Base excision repair
fcb03420
Nucleotide excision repair
fcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOS89_04710 (ligA)
03410 Base excision repair
LOS89_04710 (ligA)
03420 Nucleotide excision repair
LOS89_04710 (ligA)
03430 Mismatch repair
LOS89_04710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcb03032
]
LOS89_04710 (ligA)
03400 DNA repair and recombination proteins [BR:
fcb03400
]
LOS89_04710 (ligA)
Enzymes [BR:
fcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LOS89_04710 (ligA)
DNA replication proteins [BR:
fcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LOS89_04710 (ligA)
DNA repair and recombination proteins [BR:
fcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LOS89_04710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOS89_04710 (ligA)
MMR (mismatch excision repair)
DNA ligase
LOS89_04710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOS89_04710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
EcoRI
RNA_ligase
Auto_anti-p27
Rad9_Rad53_bind
DUF223
Zn_ribbon_Top1
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UGS24577
LinkDB
All DBs
Position
1064580..1066571
Genome browser
AA seq
663 aa
AA seq
DB search
MSVLDTIKSLREELNQHNYNYYVLDKPTISDFEFDQKLKQLQDLEAQHPEFFDENSPTQR
VGGMITKNFETVKHEYRMYSLDNSYSIEDLQDWETRIQKVLGNVPLEYTCELKYDGASIS
ISYENGRLVRAVTRGDGFQGDDVTNNIKTIKAVPIHLKGDFPAKFDIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYFVIGHNLPFKTQFEGLQK
ARDWGFKVPVQSKLAKNLNEVFEYINYWDKHRHELPYETDGVVIKVNNIQHQEELGFTAK
SPRWAMAYKFKAEQVTTKLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIK
KLDIRIGDEVFVEKGGEIIPKIIAVAKRGNQEEPTKYITHCPECQTELVRSEGEANHFCP
NFYGCPPQIIGRIQHFITRKAMDIDGLGGETVALLFNAGLVTNYADLYELKKEQIIPLER
MAEKSAENLINGIEKSKTIPFERVLYALGIRYVGETVAKKLAKHYKSIDAIAQASIMDLI
LVDEIGDKIAQSVVQFFENQENIRIIDRLKSFGVQLESGEDDVLLSEKLKGKTFVVSGVF
EIYSRDELKKAIEDNGGKVGSSISSKTDYVIAGDNMGPSKLEKANQLKIAIISELDFKQM
IDA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttttagatactattaaaagtttgagagaagaattaaatcaacataattataac
tattatgttttagataaaccgaccatttctgattttgaatttgatcaaaaactaaaacaa
ttacaagatttagaagcgcaacatcctgagtttttcgatgaaaattcgccaactcaaaga
gtaggaggaatgattacgaagaattttgaaacagtgaaacatgaatatcgaatgtattcg
ttggataattcgtattccatagaagatttacaagattgggaaacccgaattcaaaaggtt
ttaggtaatgttccattggaatatacttgcgaattaaaatacgatggagcatccattagc
atcagttatgaaaatggtcgtttagtacgtgctgtaacacgtggcgatggttttcaaggc
gatgatgtaacgaataatatcaaaactataaaggctgttcctattcatttaaaaggagat
tttcctgcaaaatttgacatccgtggagaaattattcttccgtttgccggatttgaaaaa
atgaatcaagaattaattgaaattggagaaacaccttattccaatccaagaaatacggct
tcaggaagtttgaaattgcaagacagtgctgaagtagcaaaacgtccgttggattgttta
ttgtactttgtaataggtcataatttgccttttaaaacgcaatttgaaggtttgcaaaaa
gccagagattggggttttaaagtgcctgttcaatctaaattggcaaaaaaccttaatgaa
gtttttgaatacatcaattattgggataaacaccgtcacgaattgccttatgaaacggat
ggggtagttattaaagttaataatatacaacatcaggaagagttaggttttacagcaaaa
tcgccacgttgggcaatggcatataagttcaaagccgaacaagtaactacgaaattaaat
tcgatttcgtaccaagttgggcgtactggagctattacgccagttgctaatttagaacct
gttcaattggcgggaacgattgtaaaacgtgcttcgttacacaacgctgatcaaattaaa
aaactagatattcgaattggtgatgaagttttcgtagaaaaaggtggagaaatcattcca
aaaattatagcagttgccaaaagaggaaatcaagaagaaccaacaaagtacatcacgcat
tgtccagaatgtcaaacagaattagtaagaagcgaaggcgaagcgaatcatttttgtcca
aatttctatggttgcccacctcagattattggaagaattcagcattttattacccgaaaa
gccatggatattgatggtttaggtggagaaacagttgctttattattcaatgctggtttg
gtaaccaattatgctgatttgtacgaactaaaaaaggagcaaatcattccattagaaaga
atggctgaaaaatcagcagaaaacttaatcaacggaattgaaaaatcgaaaaccattcct
tttgagcgtgttttgtatgcgttgggaattcgttatgtaggtgaaacggttgcaaaaaaa
ttagcgaaacattacaaatctattgatgcaattgcgcaagcaagtatcatggatttgatt
ttggtagatgaaattggcgataaaattgctcaaagtgttgttcaattctttgaaaatcaa
gaaaatattcgtattattgataggcttaagagttttggagttcaattagaatcgggtgaa
gatgatgttttactttcggaaaaattaaaaggaaaaacattcgttgtatcaggtgttttt
gaaatttattcaagagacgaactcaaaaaagctattgaagataacggaggaaaagtagga
agttctatttcatcaaaaaccgattatgtaattgctggagataatatgggaccatccaaa
ctagaaaaagcaaatcaattaaaaattgcaattatatcagaattagacttcaaacaaatg
atagatgcttaa
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