Flavobacterium capsici: RN605_03180
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Entry
RN605_03180 CDS
T10574
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcj Flavobacterium capsici
Pathway
fcj03030
DNA replication
fcj03410
Base excision repair
fcj03420
Nucleotide excision repair
fcj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RN605_03180 (ligA)
03410 Base excision repair
RN605_03180 (ligA)
03420 Nucleotide excision repair
RN605_03180 (ligA)
03430 Mismatch repair
RN605_03180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcj03032
]
RN605_03180 (ligA)
03400 DNA repair and recombination proteins [BR:
fcj03400
]
RN605_03180 (ligA)
Enzymes [BR:
fcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RN605_03180 (ligA)
DNA replication proteins [BR:
fcj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RN605_03180 (ligA)
DNA repair and recombination proteins [BR:
fcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RN605_03180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RN605_03180 (ligA)
MMR (mismatch excision repair)
DNA ligase
RN605_03180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RN605_03180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
EcoRI
Zn_ribbon_Top1
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WNM22373
UniProt:
A0AA96EV19
LinkDB
All DBs
Position
complement(669592..671592)
Genome browser
AA seq
666 aa
AA seq
DB search
MDIQQTITSLREELNQHNYNYYVLDNPTISDFEFDQKLKQLQELELQNPQFFDENSPTQR
VGGTITKNFETVVHDYRMYSLDNSYSKEDLIDWENRIQKVLGNVSLQYTCELKYDGASIS
ITYENGKLKRAVTRGDGFQGDDVTNNIKTIKSIPLQLKGSFPNKFDIRGEIVLPFEGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSSEVAKRPLECLLYFIVGNNLGINTQFEGLNA
ARNWGFKVPKEAKLANNLNEVLEYIDYWDKHRHNLPYETDGVVIKVNSFQQQDELGYTAK
APRWSIAYKFKAEQVSTKLNSISYQVGRTGAITPVANLESVQLAGTIVKRASLHNADQIA
KLDIRVDDTVFVEKGGEIIPKIIGVDFEKRPLNSVPTIYISNCPECNTPLHRVEGEANHY
CPNFYGCPPQIIGRIEHYISRKAMDIDGLGGETVALLFQNGLIKDYSDLYELKIEQVIPL
ERMAQKSAENLINGIEKSKQIPFERVLYAIGIRYVGETVAKKLAKHYKNIDALQQATLMD
LVLVDEIGEKIAQSVVEFFENQENVRIINRLKEFGVQMEIVEKINPNATSILEGKTFVVS
GVFSLFSRDELKQSIEDNGGKVGSSISAKTHYVIAGENMGPAKLDKANQLKIPIISENEY
VNLIKK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatattcagcagactattactagtttaagagaagagcttaatcaacataattataat
tattatgtattagataatccaactatttctgattttgagtttgaccagaaactaaaacaa
cttcaagaattagaacttcaaaatcctcaattttttgacgaaaattcaccaacacaaaga
gttggcggcacgattactaaaaacttcgaaacagttgttcatgattacagaatgtattct
ttggataactcttattcaaaagaagatttaattgattgggaaaacagaattcaaaaagta
ttgggtaatgtttcacttcaatatacatgtgagttaaaatatgatggtgcatccatttct
attacttatgaaaatggaaaattaaaacgtgccgttactcgtggcgatggttttcaaggt
gacgatgttactaataatataaaaactataaaatctattccacttcaattaaaaggtagt
tttcccaataagtttgatatacgaggcgaaatagttttgccttttgaaggttttgaaaaa
atgaatcaggaattgatagaaattggcgaaacaccatattcgaatcctagaaataccgct
tctggaagtttaaagcttcaggatagtagtgaagtagcaaaacgtccgctggaatgtttg
ctttattttatagttggaaataatctgggaattaatacacaatttgaaggtctaaacgct
gcacgaaattggggatttaaagttccgaaagaagcaaaattagccaataacctgaatgaa
gttttagaatatattgattattgggacaaacatcgacataatttaccttatgaaactgat
ggagttgtaattaaagtgaatagttttcaacaacaagatgaattaggttatacagcaaaa
gctccacgttggtcgattgcatataaatttaaagcggagcaagtttcaactaaattaaat
tcaatatcctatcaagttggtagaacaggtgcaattactccagttgctaatttagaatcg
gttcaattggccggtacaatagtaaaaagagcttcattgcataatgcagaccaaattgca
aaattagatattcgtgttgatgatactgtttttgtagaaaaaggcggtgagattattcct
aaaataattggtgttgattttgaaaaaagacctttaaattcagtgccaacaatttatatt
tcaaactgtccagaatgcaatacaccattgcatagagtagaaggtgaagcaaatcattat
tgtccaaatttctatggttgtccgccacaaataattggtagaattgaacactatatttct
agaaaagcaatggatattgatggacttggtggagaaacagttgctttgttatttcaaaat
ggtttaataaaagattattcagatttatacgaattgaaaattgagcaagttattccgttg
gaaagaatggcgcaaaaatcagccgaaaacttgataaatggaattgaaaaatcaaaacaa
attccttttgaacgtgttctttatgctattggaattagatatgttggtgaaacggttgca
aaaaaactagctaaacattataaaaatattgatgctttgcaacaagcaactttaatggat
ttagtattggttgatgaaattggagaaaaaattgcgcaaagtgtagttgagttttttgaa
aatcaagaaaatgttagaattatcaataggctgaaagaatttggagttcaaatggaaatt
gttgaaaaaataaatcctaatgcaacttcgattttagaaggaaagacttttgtggtttcg
ggagtttttagtttattttcaagagatgaactaaaacaatcaattgaagataatggtgga
aaagttggaagttcaatttcggcaaaaacacattatgtaattgcgggagaaaatatggga
ccagctaaattggataaagctaaccaattgaaaattcctattatttctgaaaatgaatat
gttaatttgataaaaaaataa
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