Fructilactobacillus cliffordii: M3M38_06340
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Entry
M3M38_06340 CDS
T08843
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcli
Fructilactobacillus cliffordii
Pathway
fcli03030
DNA replication
fcli03410
Base excision repair
fcli03420
Nucleotide excision repair
fcli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M3M38_06340 (ligA)
03410 Base excision repair
M3M38_06340 (ligA)
03420 Nucleotide excision repair
M3M38_06340 (ligA)
03430 Mismatch repair
M3M38_06340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcli03032
]
M3M38_06340 (ligA)
03400 DNA repair and recombination proteins [BR:
fcli03400
]
M3M38_06340 (ligA)
Enzymes [BR:
fcli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M3M38_06340 (ligA)
DNA replication proteins [BR:
fcli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M3M38_06340 (ligA)
DNA repair and recombination proteins [BR:
fcli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M3M38_06340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M3M38_06340 (ligA)
MMR (mismatch excision repair)
DNA ligase
M3M38_06340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M3M38_06340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
5_3_exonuc
Zn_ribbon_NUD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
USS86303
LinkDB
All DBs
Position
1275137..1277164
Genome browser
AA seq
675 aa
AA seq
DB search
MQELDLNQLTEAEAAQRAAALRPQLLQWGKEYYENDQPSVPDAEYDQAYNQLVQLETAFP
AIVTPDSPTQRVGGQVDSEFTKVPHPIPMLSLGDVFSADELNEFVVRLQKDYPAVQEFNC
ELKIDGLSISLRYEQGRLVQGSTRGNGVIGEDITANVKTIASIPQRLSRPIDIEVRGECY
MGKDAFLKLNERRELEGKATFANPRNAAAGSLRQLDPKVTAARHLSTFMYNVADYDDLEA
TTQSGLLAELKELGFSVDPDYQVAHTLDEINAYIEKYQAQRDQLSYGIDGIVIKANSLAL
QTEIGHTVKVPKWAIAYKFPPEEAHVKIDAIEWTIGRTGVVTPTAVFAPVKLAGTTVSRA
TLHNPDYIEKKDIRIGDTVVVYKAGDIIPEVEHYLPQERPADAQPYVIPTTCPSCGAELV
HLDDEVALRCINPQCPAQLAEQVTHFASRNAMDIEGLGPKIVQQLFAKHLIKDVASLYHL
QFDDLVTLDKFGEKSAQNLLQAIDQSRANSLERLLFGLGIRHVGGKAALLLAQHFGSLDQ
LRAANAEEIEAIDSIGGTIADSLVTYFAEPNSQELLQELADAGVNFEYRGQAPVTQSDSF
FFGKKVVLTGKLQEMTRGEAQSFIEVQGGTVTSSVSKKTDLVIAGEAAGSKLTKAQSLGI
PVWDEQRFSAAMAEQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggaacttgatttaaatcagctaactgaagccgaagcagcacaacgggcggcagca
ttacgcccccagttgttgcagtggggcaaggaatactacgaaaatgaccagccgtcggtg
cccgatgcggagtatgaccaggcctacaaccagttggtgcaactcgaaacggcctttccg
gcaattgtcacgccggattcgcctacgcaacgagtcgggggacaggtcgacagtgaattt
accaaagttccgcacccgattccgatgctgtctttaggggacgtcttttctgcggatgaa
ctaaacgaattcgtggtgcgcctgcaaaaggattatccggcggtccaggaatttaattgc
gagctcaaaattgatggactttccatctcactgcggtacgaacagggccggttggtgcag
ggatcgacgcggggaaacggagtgattggagaagacatcacggcgaacgtcaaaacgatt
gcttcgattccgcaacggctgagtcggccaattgacattgaggtgcggggtgagtgttac
atgggcaaagatgccttcttgaaactcaacgagcgccgcgaactcgagggcaaggcgacc
tttgccaatccacggaacgctgcggccggaagtttgcggcagctagatcccaaagtcacc
gccgcccggcacttgagtaccttcatgtacaatgtcgcggactacgatgatttagaggcc
accacccagagtggattgctggcagaactcaaagagctcggttttagtgttgaccctgac
taccaagttgcccacacgctggacgaaattaatgcttacattgaaaagtaccaggcacaa
cgggatcagctgagttatggaattgatggtattgtaattaaggctaactcgctggcgtta
caaacggaaattggtcacaccgtaaaggtgccgaagtgggcgattgcctacaagtttcct
ccagaagaagcccacgtcaaaatcgatgcaatcgaatggacgattgggcggaccggggta
gtgacccccacggcggtctttgcgccggtgaagttagccggaaccacggtctcccgggcc
acgctccacaatcctgattacatcgaaaagaaggatattcggattggcgataccgtggtt
gtttataaggccggtgacatcattcccgaggtagaacattacctgcctcaggaacgaccg
gcggatgcacaaccgtacgtgattccgaccacctgtccatcgtgtggagctgagttggtt
cacctagacgatgaagtggcgctccggtgcattaatccccagtgtccggcgcaactagct
gaacaggtgactcactttgcgtcgcgaaacgcgatggacattgaaggactcggtcccaaa
attgtgcagcagctctttgccaagcacctgattaaggacgtggctagcttgtatcaccta
cagtttgacgatctggttacgctcgacaagtttggagaaaaatcagctcagaacttattg
caggccattgatcagagtcgagcgaactcgttagaacgattgctgtttggactgggcatt
cggcatgtcggtggcaaggccgccttgttgctagcccaacactttggttcgttagaccag
cttcgggcggcgaacgctgaagaaattgaagcaatcgactccatcgggggcacgattgct
gacagcctggtgacctactttgccgaacccaacagtcaagaactcttacaagaactggcg
gatgctggcgtgaactttgaataccgaggtcaggcaccggtcacccagagtgatagtttc
ttctttggtaagaaagtggtgctcacaggcaagctgcaggagatgacgcgaggagaagcc
cagtctttcattgaagtgcaggggggcaccgttaccagtagcgtctcgaaaaaaacagac
ttagtcattgccggagaagccgccggcagtaagttaaccaaagcgcagtcgttaggcata
cccgtctgggacgaacaacgatttagcgccgccatggctgaacaataa
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integrated database retrieval system
