Flavobacterium columnare: FCOL_01335
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Entry
FCOL_01335 CDS
T01653
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fco
Flavobacterium columnare
Pathway
fco03030
DNA replication
fco03410
Base excision repair
fco03420
Nucleotide excision repair
fco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCOL_01335
03410 Base excision repair
FCOL_01335
03420 Nucleotide excision repair
FCOL_01335
03430 Mismatch repair
FCOL_01335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fco03032
]
FCOL_01335
03400 DNA repair and recombination proteins [BR:
fco03400
]
FCOL_01335
Enzymes [BR:
fco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCOL_01335
DNA replication proteins [BR:
fco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCOL_01335
DNA repair and recombination proteins [BR:
fco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCOL_01335
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCOL_01335
MMR (mismatch excision repair)
DNA ligase
FCOL_01335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCOL_01335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
5_3_exonuc
ATP-synt_10
Auto_anti-p27
CoiA_N
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AEW85116
UniProt:
G8X965
LinkDB
All DBs
Position
322099..324096
Genome browser
AA seq
665 aa
AA seq
DB search
MDVFSKIQALRNELNQHNYNYYVLDNPTISDYEFDIKLKELQELEKKHPEYDDLSSPTQR
VGGFVTKNFTTIQHEYRMYSLDNSYSKEDLLDWEIRVQKILGNRPVQYTCELKYDGASIS
ITYENGKLLRAVTRGDGFQGDDVTNNVKTIKAVPLTLQGDFPDRFEIRGEIILPFAGFEK
MNQELVEIGETPYSNPRNTASGSLKLQDSSEVAKRPLDCLLYSLIGTNLPILTQFESLEK
ARSWGFKVPIQSKLAYSMQEVFDFIEYWDTHRHEMPYETDGVVIKVNNLDQQEELGYTAK
SPRWAIAYKFKAEQVITKLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRIDDEVFVEKGGEIIPKIVGIDESKRSIHSIKTSYITHCPECQTELIRKEGEAQHY
CPNYYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFKNELVSNYADLYELKKEQIVVL
DRMADKSTDNLLAGIEKSKEITFERVLYALGIRYVGETVAKKLARHYKSIENIQKSTLEE
LITVDEIGGKIAQSVIEFFENKENLTILNRLKNYGVQLELEETVSTITSDLLKGKIFVVS
GVFEKFSRDELKQLIENNGGKVGSSISSKTHYVIAGKNMGPAKLEKATQLGVTILSEEEF
NIMLC
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatgttttttcgaaaattcaagcccttagaaacgaattaaatcagcataattacaat
tactatgttttagataaccccactatatcagactatgaatttgatataaaattaaaggaa
cttcaagagctagaaaaaaaacatccagaatatgatgatcttagttctcctactcaacgc
gtgggagggtttgtaactaaaaatttcacaactattcagcatgagtatcgtatgtactct
ttggataattcttattcaaaagaagatttgttagattgggagattcgagttcaaaaaata
ctaggaaacagacccgttcaatacacttgtgaacttaaatacgatggtgcttctataagt
attacttatgaaaatggaaaattattgcgtgcagtaactcgtggtgatggttttcaaggt
gatgatgtaacgaataatgtaaaaactattaaagcagttcccttaacacttcagggcgat
tttcctgataggtttgaaattagaggtgaaattattttaccatttgcaggattcgaaaag
atgaatcaggagttagtagaaattggagaaacaccttattcaaacccgcgaaatactgct
tctggtagtttaaaattacaagatagttcagaagtagcaaaaaggccattagattgtttg
ttgtattccttaatagggactaatttacctattctaactcaatttgaaagtttagaaaaa
gcaagaagttggggatttaaagtccctatacaatctaagttagcttactctatgcaagaa
gtttttgattttatagaatattgggatactcatcgtcatgaaatgccttatgaaacagat
ggagtagttataaaagtaaacaatttagatcaacaagaggaattaggttataccgctaaa
tcaccacgctgggcaatagcttataaatttaaagcggaacaagtaataaccaaactcaat
tctatttcttaccaagtaggtagaacaggagctataacaccagtagccaatttagaacct
gttcaattagcaggaacaattgtaaaaagagcctctttgcataatgcagatcaaatagaa
aaattagatataagaattgatgacgaagtttttgtagaaaaaggaggtgaaattattcct
aaaattgtaggaatagacgaatccaaacgttctattcattcaatcaaaacaagctatatt
actcattgtcctgagtgccaaactgagttgattcgaaaggaaggagaagcacaacattat
tgtccaaattattacggatgtcctcctcaaataattggtagaatacaacattatatatcc
cgaaaagccatggatatagaagggttaggaggagaaactgttgctttactatttaaaaat
gaactagtttctaattatgcggatttgtatgaactaaaaaaagaacaaattgttgttttg
gataggatggcagacaaatcaacagataatttattagcaggaatagaaaaatcgaaggaa
attacttttgaacgcgtattgtatgcgttaggtattcgttatgtaggcgaaactgttgct
aaaaaattagcaagacattataaatctatcgaaaatatacaaaaatctacattagaagag
ttaattactgtagatgaaataggggggaaaatagctcaaagtgtaatagaattttttgaa
aacaaagagaatttgactattttaaatcgcctaaagaactatggagtacaattagaatta
gaagaaacagtctcgactataacttctgatttattaaaaggtaaaatttttgtagtatca
ggagtatttgaaaaattttcaagagatgaattaaaacaattaatagaaaataatggagga
aaagtaggaagtagtatctcatccaaaactcattatgtaatagcaggaaaaaacatgggg
ccagccaaattagaaaaggcaacccaattaggagttactattttatcagaagaagagttt
aatataatgttatgttaa
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