Flavobacterium collinsii: TRV642_2918
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Entry
TRV642_2918 CDS
T08703
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcs
Flavobacterium collinsii
Pathway
fcs03030
DNA replication
fcs03410
Base excision repair
fcs03420
Nucleotide excision repair
fcs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TRV642_2918 (ligA)
03410 Base excision repair
TRV642_2918 (ligA)
03420 Nucleotide excision repair
TRV642_2918 (ligA)
03430 Mismatch repair
TRV642_2918 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcs03032
]
TRV642_2918 (ligA)
03400 DNA repair and recombination proteins [BR:
fcs03400
]
TRV642_2918 (ligA)
Enzymes [BR:
fcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TRV642_2918 (ligA)
DNA replication proteins [BR:
fcs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TRV642_2918 (ligA)
DNA repair and recombination proteins [BR:
fcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TRV642_2918 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TRV642_2918 (ligA)
MMR (mismatch excision repair)
DNA ligase
TRV642_2918 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TRV642_2918 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
EcoRI
Zn_Ribbon_TF
Auto_anti-p27
Zn_ribbon_Top1
DUF223
DUF819
Motif
Other DBs
NCBI-ProteinID:
CAI2767759
UniProt:
A0A9W4TIN5
LinkDB
All DBs
Position
TRV642:3314736..3316742
Genome browser
AA seq
668 aa
AA seq
DB search
MSIQETIQTLRNELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFFDENSPTQR
VGGTVTKNFKTIAHQYRMYSLDNSYSKEDLLDWENRIQKVLGNVELQYTCELKYDGASIS
ITYENGKLVQALTRGDGFQGDEVTNNIKTIKSIPLQLKGNYPEKFDIRGEIILPFAGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYFVTGNNLPFASQFEGLES
ARKWGFKVPNEAKLVQNMQEVFDFIDYWDVHRHDLPYETDGVVVKVNSIQHQEELGYTAK
SPRWAIAYKFKSEQVSTKLQSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIAVDLSKRPENSEPTQYITHCPECQTELVRNEGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFNNGLVHNYADLYELKVENILPL
ERMAQKSAENLVKGVEKSKEIPFESVLFALGIRFVGETVAKKLAKHYKNINALSQATLMD
LILVDEIGERIAKSVIEFFENEENQRIIERLKSYGIQFEIVEKINPNATEKFVGKTFVVS
GVFAQFSRDELKKTIEDNGGKVGSSISAKTDFVVAGDNMGPAKLEKASKLNIPILSEEDF
INKLNESE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagtattcaagaaacaattcagactttacgaaatgaacttaatcagcacaattataat
tattatgtgttagataacgctacaatttctgattatgattttgatattaagttaaaagaa
cttcaggatttagaaaataaacatcctgagttttttgatgaaaattctccaacgcaacga
gtgggaggtactgtgacgaaaaattttaaaacaattgcacatcagtaccgtatgtattcc
ttagacaactcttattcgaaagaggatttgttggattgggagaaccgaattcagaaagtt
ttagggaatgttgagctgcaatatacctgtgaattaaaatacgacggagcctccatcagt
attacttacgaaaacggaaaattggtacaggctttaacccgaggtgatggttttcaaggt
gatgaggtaaccaacaatatcaaaacgataaaatcaattcctttacagttaaaaggaaat
tacccggagaaatttgatatcagaggtgaaattattctgccttttgcgggtttcgaaaaa
atgaatcaggacttaattgaaattggagaaactccctattcaaatccaagaaatacagcc
tcaggaagtttgaaattacaggacagtgctgaggttgccaaacgtcctctagaatgtttg
ctatactttgttaccggaaacaatctgccatttgcatctcagtttgaaggactggaatct
gctagaaaatggggatttaaagtacctaacgaagcaaaactggtacaaaacatgcaggaa
gtttttgacttcattgattattgggacgtacaccgtcatgatttaccctatgaaaccgat
ggtgtagtggtaaaggtaaacagcattcagcatcaggaagaactaggatatacggcgaag
tcaccgcgttgggcaatagcctataaattcaaatcagaacaggtttcaaccaaactacaa
tccatttcataccaggtaggccgtacgggtgcgataaccccggtcgccaatttagaaccg
gtacaactggccgggaccatagtaaaaagagcctctttacacaatgccgatcagattgaa
aaactggatatcagaataaatgacactgtttttgtagaaaaaggaggagagattattcca
aaaataatcgcagtagatttatcaaaacgacctgaaaattcagaacccacccaatacatc
acacactgtccggaatgtcagaccgagttggttcgaaatgaaggagaggccaatcattat
tgtcctaacttttatggatgccctccgcagatcattggaaggattcaacactatatttct
agaaaagcaatggatattgaaggccttggcggtgaaacggttgccttgcttttcaataat
ggattggtacacaattatgcagatttatacgagctaaaagtagaaaatatcttaccttta
gagagaatggcgcaaaaatctgccgagaatctggtaaaaggagttgaaaaatcaaaagaa
attccatttgaaagtgttttgtttgctttgggaattcgttttgttggggagactgtcgct
aaaaaactggcgaaacattataaaaatatcaatgcattgagtcaggctactctaatggat
ctgattttagtagatgaaattggagaaagaattgctaagagcgtaattgagttcttcgaa
aatgaagaaaatcaaagaattattgaacgccttaagagctacggaattcagtttgaaatt
gttgaaaagataaatccaaacgctaccgaaaaattcgttggaaaaacatttgtagtttcg
ggagtttttgctcaattctcaagagatgaattgaagaaaaccattgaagacaatggcggg
aaagtaggaagttctatttcggcaaaaacagattttgttgttgcaggcgataatatggga
ccggctaaattagaaaaagccagtaaattaaacatccctattttatcagaagaagatttt
ataaataaattaaatgaaagcgaataa
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