Fundicoccus culcitae: NRE15_13185
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Entry
NRE15_13185 CDS
T09401
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fct
Fundicoccus culcitae
Pathway
fct03030
DNA replication
fct03410
Base excision repair
fct03420
Nucleotide excision repair
fct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NRE15_13185 (ligA)
03410 Base excision repair
NRE15_13185 (ligA)
03420 Nucleotide excision repair
NRE15_13185 (ligA)
03430 Mismatch repair
NRE15_13185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fct03032
]
NRE15_13185 (ligA)
03400 DNA repair and recombination proteins [BR:
fct03400
]
NRE15_13185 (ligA)
Enzymes [BR:
fct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NRE15_13185 (ligA)
DNA replication proteins [BR:
fct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NRE15_13185 (ligA)
DNA repair and recombination proteins [BR:
fct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NRE15_13185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NRE15_13185 (ligA)
MMR (mismatch excision repair)
DNA ligase
NRE15_13185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NRE15_13185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_3
HHH
Motif
Other DBs
NCBI-ProteinID:
UUX33823
LinkDB
All DBs
Position
2915949..2917982
Genome browser
AA seq
677 aa
AA seq
DB search
MSASEQTHNNQRKRLEDLKEQLNTYAYQYYVLDNPTISDEQYDQLYRELVGLEQLHPEWI
TTDSPTQRIGDQLSDGFQKVTHAAPMYSMSNAFNSAEVATFIDRVTRQVGQQVSFMCECK
IDGLAINLTYEEGRFVRGATRGDGEIGEDITSNLRTIRSLPLKLSEPISTEIRGEAYISK
DIFVKLNQEREENGQTPFANPRNAAAGGLRQINPKEAAQRQLNIFLYGAVYNESFHPASQ
EELFIQLEKVGLRTNPLRKVCYNLEEVEAYIKDIEEKRSTLPYEIDGVVIKVNEVAFQEE
LGYTIKAPRWAIAYKFQAEVAQTRVLDVDWTVGRTGVITPTAVMEPVQLAGTVVQRASLH
NIDLIKELDVRINDQVMIHKAGDIIPEVISVLVEERDEKSQPLDIPTQCPECHSTLERFE
GEVALRCINPLCPAQRLAQMSHFVSRNAMNIVGLGVQKIKNMLTIDLVQDVADLYYLTID
DLLKLDNTKEQSATKLYQAIQASKSNSLERLLFGLGIRHVGLNAAQVITKQFNHMDAIMT
ATEADFEAIEGIGPMISQSIVSYFDQAGSQQLIQRLKDAGVNMANKTNQDMTAADLADSF
WLDKTVVLTGKMEQYSRNEAKAILERYGAKVTGSVSKNTDILIAGEDAGSKLSQAERLEV
EIWNEAEFLAHIEERKE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtcagaacaaacccataataatcagagaaagcgacttgaagacttaaaagaa
caattaaatacctatgcttatcagtattatgtactagacaatccaacgataagcgatgaa
caatatgatcaattatatcgtgaattagtaggattagagcaattacacccagaatggatt
accactgattcgcccacccaaagaattggggatcagttgagcgatggttttcaaaaagtt
acgcatgcagcacctatgtatagtatgagtaatgcctttaacagtgcagaagtagcgaca
tttattgatcgtgttacgcgtcaagtgggtcaacaagtgagttttatgtgtgaatgtaag
attgacggtttagccatcaatttaacgtatgaagaaggacgctttgtgcgaggggcaacc
cgtggggatggcgaaattggcgaggatattacttccaatttacggaccatccgttcactg
cctttaaaattatctgagcctataagtaccgaaattcgtggggaagcgtatatctcaaaa
gatatttttgttaaacttaaccaagaacgtgaagaaaatgggcaaacaccttttgctaac
cctagaaacgctgctgctggtggtctacgacaaatcaatcctaaagaagccgctcaaaga
caactcaatatttttctatacggtgcagtgtacaatgagtcttttcatccagcgtcacaa
gaggagttatttattcaattagaaaaagttgggctgcgcaccaaccccttacgcaaggtt
tgctataatcttgaagaggtagaagcctacatcaaggatattgaggaaaaacggtcaacc
ttgccctatgagattgatggggttgtgattaaagtgaatgaagtagctttccaagaagaa
ttaggttataccattaaagcgccacgatgggctatcgcttataagtttcaagcagaagtt
gcccagacacgtgtcttagatgtagactggactgtaggcagaaccggcgttattacaccg
acggctgtgatggagccagtacagttagcaggtacggttgttcaaagggcaagtctgcat
aatattgatttgattaaagaattagatgtgcgtatcaatgatcaagttatgatccataaa
gccggcgatattatccctgaagtgatcagtgtccttgttgaagaacgggatgaaaagagt
caaccccttgacattcctacccagtgtccggaatgtcattcaaccttggaacgttttgag
ggagaagttgccttacggtgtattaatcccctatgtcctgcgcaacgattagcccaaatg
agtcattttgtttctaggaatgccatgaatattgttggtttaggtgttcaaaaaattaaa
aacatgttgacgattgatttggttcaagatgtagctgatttgtattatttaacgattgac
gacctcttaaagttagataatacgaaagagcaatcggctactaaattgtatcaggcgatt
caagcgagtaaatccaattcattagaacgtttgctgtttggcttaggcattcggcacgtt
ggtttgaatgccgcccaagtaatcaccaagcaattcaatcatatggatgcgattatgaca
gcgacggaagctgattttgaagccatcgaagggattggaccgatgattagccaatccatt
gttagctattttgaccaagcaggtagccagcaactcattcaacgcttaaaagatgcgggt
gtcaatatggctaataagaccaaccaagatatgacagcggctgatttagccgattcattt
tggttagataaaaccgttgttttgacgggtaagatggagcaatactcccgtaacgaggcc
aaagcgattttggaaagatatggggctaaagtgaccggcagcgtttctaaaaataccgat
atattaatagcaggtgaggatgctggtagtaaactcagccaggctgaacgcttagaggta
gaaatctggaatgaagctgaatttttagcgcatattgaagaaaggaaagaataa
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