Flavobacterium cerinum: NOX80_17390
Help
Entry
NOX80_17390 CDS
T09039
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcu
Flavobacterium cerinum
Pathway
fcu03030
DNA replication
fcu03410
Base excision repair
fcu03420
Nucleotide excision repair
fcu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NOX80_17390 (ligA)
03410 Base excision repair
NOX80_17390 (ligA)
03420 Nucleotide excision repair
NOX80_17390 (ligA)
03430 Mismatch repair
NOX80_17390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcu03032
]
NOX80_17390 (ligA)
03400 DNA repair and recombination proteins [BR:
fcu03400
]
NOX80_17390 (ligA)
Enzymes [BR:
fcu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NOX80_17390 (ligA)
DNA replication proteins [BR:
fcu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NOX80_17390 (ligA)
DNA repair and recombination proteins [BR:
fcu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NOX80_17390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NOX80_17390 (ligA)
MMR (mismatch excision repair)
DNA ligase
NOX80_17390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NOX80_17390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
EcoRI
HHH
zf-C4_Topoisom
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UUC45386
LinkDB
All DBs
Position
complement(3837297..3839294)
Genome browser
AA seq
665 aa
AA seq
DB search
MDILQTIQTLREELNQHNYNYYVLDNPTISDYEFDLKLKELQELESKHPEYFDEDSPTQR
VGGTITKNFETVFHEYRMYSLDNSYSKEDLLDWEKRAQKILGDVALEYTCELKYDGASIT
ISYENGKLKRAVTRGDGFQGDDVTNNIKTIKAVPISLKGDFPPKFDIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYAIVGQQLPFQSQFEGLEK
ARNWGFKVPKQAHLARNMEEVFEFIDHWDVHRHELPYETDGVVIKVNSLQYQDELGYTAK
SPRWAIAYKFKAEQVSTRLLSIAYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRIGDTVFVEKGGEIIPKIIAVDLENRQEDSQKTVYITHCPECQTELVRKEGEAQHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLYNNGLVLDYADLYELKKEQVVPL
ERMAEKSADNLIKGIEKSKEIPFERVLFALGIRYVGETVAKKLAKHYKTIDAIAQANLTD
LVLVDEIGEKIAQSVVEFFANDSNKVIIERLKTFGVQLEMGAHHDTAVSDLLSGKTFVVS
GVFEKFSRDDLKKAIEDNGGKLGSSISKKTDYVVAGANMGPSKLEKASQLNIPIISEDDF
LIMIQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatattttacagacaattcagacgctgagagaagagttgaatcaacataattataat
tattatgttttggataatccaaccatttcagattatgaatttgatttgaaattgaaagag
ttacaggaacttgaaagcaagcatccggaatattttgatgaagattcaccgacacaaagg
gtcggaggaacaataacgaagaattttgaaacggtgtttcatgaatacagaatgtattcg
cttgataactcatattccaaagaagatttattagattgggaaaaaagagcccagaaaata
ttgggcgatgtggcattggagtatacctgtgagttaaaatacgatggtgcttccattacg
atttcttatgaaaacggaaagttaaaacgagcagtaactcggggagatggttttcaaggg
gatgatgtgactaataatatcaaaacaattaaagccgttccgattagtttgaaaggcgat
tttccgccaaagttcgacattcggggtgaaattattttaccttttgccggctttgaaaaa
atgaatcaggagttgatcgaaatcggtgaaacaccgtattcaaatccgagaaatacagct
tccggaagcttaaaactacaagatagcgcggaagtcgctaaaagaccgttggattgtttg
ttatatgcaatagtggggcaacaactaccgtttcagtcgcagtttgaaggtttggaaaaa
gcgagaaactggggttttaaagtacccaaacaggcacatctggcccggaatatggaggag
gtttttgaatttattgatcattgggatgtgcaccgtcatgagttaccctatgaaaccgat
ggtgtcgtgataaaagtaaatagcctgcaataccaggatgaattggggtatactgctaaa
tcaccacgttgggcgattgcttataaatttaaagcagagcaggtgtcgactcgtttactg
tcgattgcttatcaggtcggacgaaccggagcgattacgcccgtagcaaatttggaaccg
gttcaattagccggaacaattgtaaaacgagcttccttacataacgctgatcagattgaa
aaactggatatccgtatcggcgacacggtttttgtggaaaaaggaggtgaaattattccg
aaaattattgctgttgatctcgaaaacagacaggaagattctcaaaaaacggtttatata
acgcattgtccggaatgtcagaccgaattggttcgaaaagaaggtgaagcgcaacattat
tgtccgaatttctacggatgtccgccgcagattatcggacgtattcaacattatatttcg
cgtaaagcaatggatattgaaggtttaggtggtgaaaccgttgctttgctatataataac
ggactggttctggattatgccgatttgtatgaactgaaaaaagaacaggtagttccgttg
gaaagaatggcggaaaaatcagcagacaatctgataaaaggaattgaaaaatcgaaagaa
ataccgtttgaacgcgtgttgtttgcgcttggtatccgctatgtaggggaaacggttgct
aaaaaactggcgaaacattataaaacgattgatgctattgcgcaggcgaatttgacagat
ttggtattggttgatgaaatcggagaaaaaattgcacaaagtgttgttgaattctttgcc
aatgattcgaataaagttattatcgaacggctgaaaacttttggtgtgcaacttgagatg
ggagcacatcatgatacggctgtgtctgatttgttatccggaaaaacctttgtcgtatcc
ggtgtttttgagaaattttcgagagatgatttaaaaaaagcaattgaagataacggagga
aagctaggaagttcaatttctaaaaaaacggattatgttgtagcgggtgccaatatggga
ccgtcgaaattagaaaaagccagtcagttaaatattccgattatttcagaagatgatttt
ctgataatgattcagtaa
DBGET
integrated database retrieval system