Flavobacterium covae: AWN65_06255
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Entry
AWN65_06255 CDS
T08038
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcv
Flavobacterium covae
Pathway
fcv03030
DNA replication
fcv03410
Base excision repair
fcv03420
Nucleotide excision repair
fcv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWN65_06255
03410 Base excision repair
AWN65_06255
03420 Nucleotide excision repair
AWN65_06255
03430 Mismatch repair
AWN65_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcv03032
]
AWN65_06255
03400 DNA repair and recombination proteins [BR:
fcv03400
]
AWN65_06255
Enzymes [BR:
fcv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AWN65_06255
DNA replication proteins [BR:
fcv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AWN65_06255
DNA repair and recombination proteins [BR:
fcv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AWN65_06255
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWN65_06255
MMR (mismatch excision repair)
DNA ligase
AWN65_06255
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWN65_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
HHH
RNA_ligase
5_3_exonuc
Auto_anti-p27
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
AMA49088
LinkDB
All DBs
Position
complement(1398211..1400208)
Genome browser
AA seq
665 aa
AA seq
DB search
MDIFLKIQALRNELNQHNYNYYVLDTPTISDYEFDIKLKELQELEEKHPEYNDLSSPTQR
VGGAVTKNFQTIQHEYRMYSLDNSYSKEDLLDWEIRIQKILGNRPVEYTCELKYDGASIS
ITYENGKLLRAATRGDGFQGDDVTQNVKTIKAVPLTLKGDFPEKFEIRGEIILPFAGFEK
MNQELIEIGESPYSNPRNTASGSLKLQDSSEVAKRPLDCLLYSLIGTNLPITTQFEGLEK
ARNWGFKVPIQSKLAYSMQEVFDFIEYWDAHRHEMPYETDGVVVKVNNLDQQEELGYTAK
SPRWAIAYKFKAEQVVTKLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRIDDEVFVEKGGEIIPKIIGVDESKRSIHSIKTNYITHCPECQTELIRKEGEAQHY
CPNYYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFKNKLVSNYADLYELKKEQIVVL
DRMADKSADNLLIGIEKSKEITFERVLYALGIRYVGETVAKKLAKHYKSIENLQNSTLEE
LVTVDEIGVKIAQSLIEFFENQNNLDILNRLRNYGILLELQETTSVVSSDLLKGKNFVVS
GVFENISRDELKQLIENNGGKIGSSISSKTHYVVAGKNMGPAKLEKATQLGITILSEEEF
NAMLC
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatatttttttgaaaattcaagcccttagaaacgaactaaatcaacataattataat
tactatgttttagatactcctactatatcagattatgagtttgatataaaattaaaagaa
cttcaagagctagaggaaaaacatccagaatataatgatcttagttctcccacgcagcgt
gtaggaggggctgtaactaaaaatttccaaacaatacaacacgaatatagaatgtactcc
ttagataattcttattcaaaagaagatttgttagattgggagattcgaattcaaaaaata
ctaggaaatagaccagttgaatacacctgtgaacttaagtacgatggtgcttctataagt
attacctatgaaaatggaaaattattacgtgcagcaactcgtggtgatggttttcaggga
gatgatgtaacacagaatgtaaaaacaattaaagcagttcctctaacacttaagggggat
tttcctgagaaatttgaaattagaggtgaaattattttgccctttgctggatttgaaaaa
atgaatcaagaattaatagaaataggagagtcaccttattcaaacccaagaaatactgct
tcagggagtttaaaattacaagatagttcagaagttgctaaaagacctttggattgtttg
ttatattcattaataggaactaatttacctatcacaactcaatttgaaggcttagaaaaa
gcgagaaattggggttttaaagtacctatacaatcaaaattagcttattctatgcaagaa
gtttttgattttattgaatattgggatgcccatcgtcatgaaatgccttatgaaacggat
ggagtagttgtaaaagtaaataacttagatcagcaagaagaattaggttatacagctaaa
tcaccacgttgggcaatagcttataaatttaaggcagaacaggtggtaactaagctaaat
tctatttcctatcaagtaggtagaacaggtgctataacaccagtagccaatttagagcct
gtccagttagcaggaacaatagtaaaaagagcctctttacataatgccgatcagatagaa
aaattagatataagaattgatgacgaagtttttgtagaaaaaggaggcgaaattattcct
aaaattataggagtagatgaatccaaacgttctattcattcaatcaaaacaaactatatt
actcattgtccagagtgccaaacggaattaattagaaaagaaggagaagcacagcattat
tgccctaattattatggatgcccacctcaaataataggtagaattcaacattatatatct
cgaaaagcaatggatatagaagggttagggggagaaaccgttgctttactatttaaaaat
aaattagtttctaattatgctgatttgtatgaacttaaaaaagaacaaattgttgttttg
gataggatggcagacaaatcagcagataatttattaataggaatagaaaaatcgaaagaa
attacttttgaacgtgtattatacgcattaggtattcgatatgtaggagaaaccgtagcc
aaaaaattggcaaaacattataaatcaattgaaaatcttcaaaattcaacattagaagag
ttggttactgttgatgaaataggtgtgaaaatagctcaaagtctaatagaattttttgaa
aatcaaaataatttagatattttgaatcgacttagaaattatggaatattgttagaatta
caagaaacaacttctgtagtaagttcagatttattgaaaggtaaaaattttgtagtatca
ggagtttttgaaaatatttcaagagatgaattaaaacaattaatagaaaataatggagga
aaaataggaagtagtatatcttctaaaacccattatgtagtggcaggaaaaaatatggga
cctgcgaagttagaaaaagcaacacaacttggaattacgatattatcagaagaagaattt
aatgcaatgttatgttaa
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integrated database retrieval system