KEGG   Flavobacterium covae: AWN65_06255
Entry
AWN65_06255       CDS       T08038                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fcv  Flavobacterium covae
Pathway
fcv03030  DNA replication
fcv03410  Base excision repair
fcv03420  Nucleotide excision repair
fcv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fcv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AWN65_06255
   03410 Base excision repair
    AWN65_06255
   03420 Nucleotide excision repair
    AWN65_06255
   03430 Mismatch repair
    AWN65_06255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fcv03032]
    AWN65_06255
   03400 DNA repair and recombination proteins [BR:fcv03400]
    AWN65_06255
Enzymes [BR:fcv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AWN65_06255
DNA replication proteins [BR:fcv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AWN65_06255
DNA repair and recombination proteins [BR:fcv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AWN65_06255
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AWN65_06255
   MMR (mismatch excision repair)
    DNA ligase
     AWN65_06255
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AWN65_06255
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT HHH RNA_ligase 5_3_exonuc Auto_anti-p27 zf-C4_Topoisom
Other DBs
NCBI-ProteinID: AMA49088
LinkDB
Position
complement(1398211..1400208)
AA seq 665 aa
MDIFLKIQALRNELNQHNYNYYVLDTPTISDYEFDIKLKELQELEEKHPEYNDLSSPTQR
VGGAVTKNFQTIQHEYRMYSLDNSYSKEDLLDWEIRIQKILGNRPVEYTCELKYDGASIS
ITYENGKLLRAATRGDGFQGDDVTQNVKTIKAVPLTLKGDFPEKFEIRGEIILPFAGFEK
MNQELIEIGESPYSNPRNTASGSLKLQDSSEVAKRPLDCLLYSLIGTNLPITTQFEGLEK
ARNWGFKVPIQSKLAYSMQEVFDFIEYWDAHRHEMPYETDGVVVKVNNLDQQEELGYTAK
SPRWAIAYKFKAEQVVTKLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRIDDEVFVEKGGEIIPKIIGVDESKRSIHSIKTNYITHCPECQTELIRKEGEAQHY
CPNYYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFKNKLVSNYADLYELKKEQIVVL
DRMADKSADNLLIGIEKSKEITFERVLYALGIRYVGETVAKKLAKHYKSIENLQNSTLEE
LVTVDEIGVKIAQSLIEFFENQNNLDILNRLRNYGILLELQETTSVVSSDLLKGKNFVVS
GVFENISRDELKQLIENNGGKIGSSISSKTHYVVAGKNMGPAKLEKATQLGITILSEEEF
NAMLC
NT seq 1998 nt   +upstreamnt  +downstreamnt
atggatatttttttgaaaattcaagcccttagaaacgaactaaatcaacataattataat
tactatgttttagatactcctactatatcagattatgagtttgatataaaattaaaagaa
cttcaagagctagaggaaaaacatccagaatataatgatcttagttctcccacgcagcgt
gtaggaggggctgtaactaaaaatttccaaacaatacaacacgaatatagaatgtactcc
ttagataattcttattcaaaagaagatttgttagattgggagattcgaattcaaaaaata
ctaggaaatagaccagttgaatacacctgtgaacttaagtacgatggtgcttctataagt
attacctatgaaaatggaaaattattacgtgcagcaactcgtggtgatggttttcaggga
gatgatgtaacacagaatgtaaaaacaattaaagcagttcctctaacacttaagggggat
tttcctgagaaatttgaaattagaggtgaaattattttgccctttgctggatttgaaaaa
atgaatcaagaattaatagaaataggagagtcaccttattcaaacccaagaaatactgct
tcagggagtttaaaattacaagatagttcagaagttgctaaaagacctttggattgtttg
ttatattcattaataggaactaatttacctatcacaactcaatttgaaggcttagaaaaa
gcgagaaattggggttttaaagtacctatacaatcaaaattagcttattctatgcaagaa
gtttttgattttattgaatattgggatgcccatcgtcatgaaatgccttatgaaacggat
ggagtagttgtaaaagtaaataacttagatcagcaagaagaattaggttatacagctaaa
tcaccacgttgggcaatagcttataaatttaaggcagaacaggtggtaactaagctaaat
tctatttcctatcaagtaggtagaacaggtgctataacaccagtagccaatttagagcct
gtccagttagcaggaacaatagtaaaaagagcctctttacataatgccgatcagatagaa
aaattagatataagaattgatgacgaagtttttgtagaaaaaggaggcgaaattattcct
aaaattataggagtagatgaatccaaacgttctattcattcaatcaaaacaaactatatt
actcattgtccagagtgccaaacggaattaattagaaaagaaggagaagcacagcattat
tgccctaattattatggatgcccacctcaaataataggtagaattcaacattatatatct
cgaaaagcaatggatatagaagggttagggggagaaaccgttgctttactatttaaaaat
aaattagtttctaattatgctgatttgtatgaacttaaaaaagaacaaattgttgttttg
gataggatggcagacaaatcagcagataatttattaataggaatagaaaaatcgaaagaa
attacttttgaacgtgtattatacgcattaggtattcgatatgtaggagaaaccgtagcc
aaaaaattggcaaaacattataaatcaattgaaaatcttcaaaattcaacattagaagag
ttggttactgttgatgaaataggtgtgaaaatagctcaaagtctaatagaattttttgaa
aatcaaaataatttagatattttgaatcgacttagaaattatggaatattgttagaatta
caagaaacaacttctgtagtaagttcagatttattgaaaggtaaaaattttgtagtatca
ggagtttttgaaaatatttcaagagatgaattaaaacaattaatagaaaataatggagga
aaaataggaagtagtatatcttctaaaacccattatgtagtggcaggaaaaaatatggga
cctgcgaagttagaaaaagcaacacaacttggaattacgatattatcagaagaagaattt
aatgcaatgttatgttaa

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