Fragilariopsis cylindrus: FRACYDRAFT_274686
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Entry
FRACYDRAFT_274686 CDS
T04784
Name
(GenBank) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
fcy
Fragilariopsis cylindrus
Pathway
fcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRACYDRAFT_274686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcy03019
]
FRACYDRAFT_274686
Messenger RNA biogenesis [BR:
fcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
FRACYDRAFT_274686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
SMC_N
NACHT
FtsK_SpoIIIE
nSTAND3
ORC-CDC6-like
AAA_22
AAA_16
AAA_28
AAA_15
RsgA_GTPase
AAA_33
Imm5
AAA_25
AAA_23
G-alpha
SRP54
AAA_30
AAA_18
Motif
Other DBs
NCBI-ProteinID:
OEU20138
JGI:
274686
UniProt:
A0A1E7FPQ4
LinkDB
All DBs
Position
Unknown
AA seq
316 aa
AA seq
DB search
MYALSVRPVITGEGMLSEMNAIQQAVIIGMNVLHNLNLKLKTGSRCLLIGANGSGKSTLL
RILAGRHLTQHQGGDVKILGLNSFRETKLNFHRAYLNTDWGMTSMAFVGASVPLCADIPV
RKMMEKLQNSYPERRDELVRMLGIDLDWHMHQLSDGQRRRVQIMIGLVRPFKILLLDEIT
TSLDVCVRQDLLQWLVKESEERGATILYATHIFDGLDEWASDLFYLTNKGKCGWQGRMEE
LELYQQLQRDNHPAKMLAIADHWLRKELNEQRAKNQYEKAQYAVELDPTDRQGGYASGRN
IPMEETTTQNKSQKKS
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctttgtctgtaaggcctgtgatcactggcgagggcatgttgtctgaaatgaat
gcgattcagcaagctgttatcattggtatgaatgtattacataatttgaatttaaaatta
aaaactggttccagatgtttattaattggtgccaatggtagtggcaaatccacattgtta
cggatattagctggtcgacatttaacacaacaccaagggggggatgtgaaaatattagga
ttaaattccttccgtgaaacaaaattaaattttcatcgtgcctatttaaatactgattgg
ggtatgacatcaatggcatttgttggtgcatctgtaccattatgtgctgatatacctgtt
cgtaaaatgatggaaaaattacaaaattcatatccagaacgtcgtgatgaattagtacgg
atgttaggtattgatttggattggcatatgcatcaattatcagatggacaacgccgacga
gtacaaattatgattggtttagtacgaccatttaaaatcttactgttagatgaaattact
acatcattggatgtttgtgtacgacaagatttattacaatggcttgtgaaagaaagtgag
gaacgtggtgccactattttatatgccacgcatatctttgatggattagacgagtgggca
tccgatttattttatttgactaataaaggcaaatgtggatggcagggtagaatggaggaa
ttagaattgtatcaacaattacaacgtgataaccatcccgcgaagatgttagcaattgcg
gatcattggttacggaaggaattaaacgaacaacgcgcgaagaatcaatatgagaaagca
caatatgcagtggaattagatccaacggatcgtcagggtggatatgctagtggtagaaat
attccaatggaggaaacaactactcaaaacaaatcgcaaaaaaaatcgtag
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