Candidatus Fermentithermobacillus carboniphilus: IMF26_08125
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Entry
IMF26_08125 CDS
T09838
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fcz
Candidatus Fermentithermobacillus carboniphilus
Pathway
fcz03030
DNA replication
fcz03410
Base excision repair
fcz03420
Nucleotide excision repair
fcz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMF26_08125 (ligA)
03410 Base excision repair
IMF26_08125 (ligA)
03420 Nucleotide excision repair
IMF26_08125 (ligA)
03430 Mismatch repair
IMF26_08125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fcz03032
]
IMF26_08125 (ligA)
03400 DNA repair and recombination proteins [BR:
fcz03400
]
IMF26_08125 (ligA)
Enzymes [BR:
fcz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMF26_08125 (ligA)
DNA replication proteins [BR:
fcz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMF26_08125 (ligA)
DNA repair and recombination proteins [BR:
fcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMF26_08125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMF26_08125 (ligA)
MMR (mismatch excision repair)
DNA ligase
IMF26_08125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMF26_08125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
HHH_3
Chal_sti_synt_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QUL98025
UniProt:
A0AAT9LDX4
LinkDB
All DBs
Position
1667139..1669202
Genome browser
AA seq
687 aa
AA seq
DB search
MREVSREEAKRRIEELRKEILEHQYRYYVLDQPVISDHEFDLLFEELRALEEKFPDLVTP
DSPTQRVGGGVSPSFVSVPHTAPVLSLSNAFSEGEVRTFDRRIRDLSRTEISPEYVIEPK
IDGLSVIIRYENGILALGLTRGDGLVGEDVTANIKTVKSIPLRLREEVLGCPDFLEVRGE
VYLPKDDFKRLNEERQEKGLSTFANPRNAAAGSLRQLDPKVTASRPLRALFYEIRVIRGI
EPPRTEVQALSMLKAMGFPIPKYEFCHSIEDVVSRIERWREERHRLPYDTDGIVIKLNDL
DVARSIGATGHSPRYQLAYKFPAEEVETKVLDIIVQVGRTGVLTPTAVLEPVSVSGSTVS
RATLHNEDVIREKDIRIGDTVILRKAGEVIPEIVAVVKEKRTGREVEFRMPERCPACGAE
VVRLPGEAAHRCTGLACPAQLKESLIHFASRDAMDIRGLGPSMVESLLEAQLVKDAGDLY
FLEVEDIMKLPRQGKKSAENLVESIRASKERPLDRLIYALGIRHVGQQASYALAAEFETL
DRFLNATEEELTKVPNIGPETARSIVLASRQESMKVIVAKLKKAGLKAAIGKSEKPAATG
EGPFSGKTVVVTGTIAGMTRKEAEDAIVALGGKVSSSVSKNTDFLVVGENPGSKLEKAKT
TGVPIMSQTEFLKILAERGIKVDGDRR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgagggaggtttcaagggaagaggccaagaggcgtatagaagaactcaggaaagagatt
ctggagcaccagtaccgttactacgtgctggaccagccggtgatttcagaccacgaattt
gacctccttttcgaggaactacgggcgctggaagagaagttcccggacctggttactccc
gactctcccacccagagggtcggaggaggggtttctccatccttcgtctcggttccccat
acggcccctgtgcttagcctttctaacgctttttccgaaggggaagtccggactttcgac
cgaaggataagggatctgtcccggaccgagatctcgccggaatacgtgatcgagcccaag
atagacggactgtcggttatcatccgttacgaaaacgggatcctggccctcgggctcact
cggggtgacggtttggtgggcgaggatgtcaccgccaacatcaagactgtaaaatccatc
cctttgagactccgcgaggaggtcctgggttgtcccgactttttggaggtccgtggcgaa
gtgtacctaccgaaggatgacttcaagcggctcaatgaggaaagacaggaaaagggactt
tctacattcgccaaccccaggaacgcggcggcaggttctctgagacagctcgaccccaaa
gtgactgcctctcgccctctccgagcgcttttctacgagatacgcgtcataagaggaatc
gaacctccccggaccgaggtccaggctctttccatgctgaaagcaatgggttttccgatc
ccgaagtacgagttctgccattccatcgaagatgtcgtctcacgcatagaacgatggcgg
gaggagcgccatcggttaccctacgatacagatggtatcgtaattaaattaaacgatttg
gacgttgcccggtccataggagcgacgggtcactcccccaggtatcagcttgcgtataag
tttcccgcagaagaagtagagaccaaagttctcgatatcatcgtgcaggtgggaaggacg
ggggtcctgacacccaccgcggtgcttgaacctgtcagtgtctccggctcgaccgtatcc
cgggccacccttcataatgaagacgtcatccgggaaaaggacatccggataggggatacc
gtgattttacgcaaagctggcgaggttataccggaaatcgtggccgtcgtcaaggagaaa
cgcaccggccgcgaggtagagttccggatgccggaaaggtgcccggcctgcggtgctgag
gtagtgcgccttccgggtgaagcggctcaccgctgtacagggttggcgtgtcccgcacag
ctgaaagagagtctcatccattttgcctcccgggatgccatggatataagaggcctcggg
ccctctatggttgaatctctcctcgaggctcaactcgtcaaagatgcaggtgacctgtat
tttcttgaagtggaggacataatgaaacttccaaggcagggaaagaaatctgctgaaaac
ctcgtggagagtatacgtgcgtccaaagaaagacctcttgacaggctgatctacgcttta
ggcatacgtcacgtcgggcaacaggcatcgtacgccctggcggctgagttcgaaaccctc
gatagatttctcaacgccaccgaagaagaactcacgaaagttcccaacataggtcctgag
acagcaagatctatcgtcctcgcttcaaggcaggagtccatgaaggtcatcgtcgcaaaa
ttgaagaaggcgggtctgaaagccgccatcgggaaaagcgaaaaacctgctgcgaccgga
gaagggcctttttccgggaagaccgtggtggtgaccggaaccatcgcggggatgactcgt
aaggaagccgaagatgccatcgtggctcttggcggtaaagtgtcgtcttctgtttcaaag
aataccgatttcctggtagttggggaaaatccggggtcaaagctggaaaaggctaaaacc
accggagtccccatcatgtcccagaccgagttcttgaagatactggcagaaaggggcata
aaggtcgatggagatagacgttaa
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