Faecalibacterium duncaniae JCM 31915: GXM22_07715
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Entry
GXM22_07715 CDS
T08154
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fdu
Faecalibacterium duncaniae JCM 31915
Pathway
fdu03030
DNA replication
fdu03410
Base excision repair
fdu03420
Nucleotide excision repair
fdu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GXM22_07715 (ligA)
03410 Base excision repair
GXM22_07715 (ligA)
03420 Nucleotide excision repair
GXM22_07715 (ligA)
03430 Mismatch repair
GXM22_07715 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fdu03032
]
GXM22_07715 (ligA)
03400 DNA repair and recombination proteins [BR:
fdu03400
]
GXM22_07715 (ligA)
Enzymes [BR:
fdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GXM22_07715 (ligA)
DNA replication proteins [BR:
fdu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GXM22_07715 (ligA)
DNA repair and recombination proteins [BR:
fdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GXM22_07715 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GXM22_07715 (ligA)
MMR (mismatch excision repair)
DNA ligase
GXM22_07715 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GXM22_07715 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
Nlig-Ia
Zn_ribbon_NUD
5_3_exonuc
BRCT_2
DUF6085
RUBY_RBDX
HHH
Motif
Other DBs
NCBI-ProteinID:
QIA42960
LinkDB
All DBs
Position
complement(1584107..1586104)
Genome browser
AA seq
665 aa
AA seq
DB search
MELEQARKRAEELRVIIERNNRLYYDQDAPELEDFEYDALTRELKALEAEFPQLVTANSP
TQKVGGTPSGRFAKVTHAVKMESLLDAFSFDELRDFDRRVREAGIEPEYVVEIKIDGLSC
SLEYENGVLVRASTRGDGVVGEDVTANVKAIKRIPKTLKNAPEYLEVRGEVYMPHDAFQH
LCAEQELQGAAPFKNPRNAAAGSLRQKDSKITGSRGLSIFVFNVQQVRGRELTSHAESLD
YLKSLGLPVSPRYHIVHDIEDAIAEIEQIGQNRAALDFDMDGAVIKVNNFAQRELLGSTN
KFPRWAIAFKYPPEVKETTLRSIEVGVGRTGVLTPTACFDPVFLAGTTVSRATLHNEDFI
RQLGLCIGDTIQVRKAGDIIPEVIGVTRHEPDAQPYQMPEFCPSCGAPAVHLEDEAALRC
VNPECPAQALRNIIHFASRDAMDIDGLGTMVATQLVDKGLVHSAADLYDLTIEQLLTLEK
FKEKSANNLLQAIEASKQNNLDKLMFAFGIRNIGDKAAALLAEHFGSLQAIREATEEQIG
EIDGFGGVMAQSVTEFFAKDGTTDLVHRLADAGVNMQWKGEPKGDKLAGKTLVVTGTLET
LSRSEAEALIVKNGGKASGSVSKKTAYVVAGAAAGSKLTKAQALGVPVLTEVEFLAMIAE
DKSQQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
gtggaactggaacaggcacgcaaacgcgcggaagagctacgcgtgatcattgaaaggaac
aaccgtttatactatgatcaggatgccccggagctggaggattttgaatatgacgctttg
acccgggagctgaaagcattggaagcagaattcccgcagctggtcactgcgaattctccg
acccagaaagtgggcggaacccccagcgggcgctttgccaaggtgacacatgctgtgaag
atggaaagccttttggatgcgttttccttcgatgaactgcgcgatttcgaccgccgggta
cgggaagccgggatcgagccggaatatgtcgtcgagatcaagatcgacggcctttcctgc
agcttggaatatgagaacggcgtacttgtgcgtgcttccacccgcggcgacggcgtggtg
ggtgaagatgtgacagccaatgtcaaggctatcaagcgtattccaaagactttgaaaaat
gccccggaatatctggaagtgcgcggcgaggtctacatgccgcacgatgccttccagcac
ctttgtgcggaacaggaattacagggtgcggcaccgttcaaaaatccgcgcaatgctgcc
gcagggtctctgcgtcagaaggattctaagatcaccggcagccgggggttgtccatcttc
gtattcaacgtccagcaggtgcggggcagggaactgaccagccatgccgaaagcctcgac
tacctcaagagtctgggcctgccggtctccccgcgttatcatatcgtgcatgatatcgag
gatgccattgcagagatcgagcagatcggccagaaccgtgcagcactggattttgatatg
gacggtgctgtgatcaaggtgaacaactttgcacagcgggaactgctgggctccaccaac
aaattcccgcgctgggccattgcgttcaagtatccgcccgaggtcaaggagaccacattg
cgcagtattgaagtcggcgtgggacgcaccggcgttctgactcccaccgcctgttttgac
ccggtgtttctggcaggtaccacggtttcccgtgccacccttcacaatgaagattttatc
cgtcaactgggtctgtgtatcggagataccattcaggtgcgcaaggcgggtgatatcatt
ccggaggtcatcggtgtgacccgccacgaaccggacgctcagccttaccagatgccggaa
ttttgcccttcctgcggtgctccggcagtgcacctggaagatgaagctgctttgcgctgt
gtcaacccggaatgccccgcacaggcactccgcaatatcatccactttgcatcccgggat
gccatggacatcgacggtctgggcaccatggtcgccacgcagctggtggataaagggctg
gtacactctgcggcagatctctatgacttgacaatagagcagctgctcacgctggaaaag
ttcaaggaaaagagcgcaaacaatcttctgcaggcgatcgaagcttccaagcagaacaat
ctggataagctgatgtttgcgtttggaatccgcaacatcggcgataaagccgccgcattg
ctggcagagcattttggctctctgcaggccatccgggaagcaaccgaggagcagatcggc
gagattgatggttttggcggcgtgatggcccagagcgtgactgaattctttgccaaggat
ggcacaacggatctggtgcaccgtctggccgatgccggtgtgaacatgcaatggaagggg
gagcccaagggcgataagctcgccgggaaaacgctggtcgtgaccggaacgctggaaaca
ctctcccgcagtgaagctgaggcacttatcgtaaagaatggcggcaaagcaagcggttct
gtttccaaaaaaacagcgtatgtggtggctggtgccgccgcaggttccaagctgaccaaa
gcacaggcactgggtgtgcctgtgctgaccgaggtagagtttcttgctatgatcgcagag
gataagtcccagcaataa
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