Frateuria edaphi: LQ772_15080 Help Entry LQ772_15080       CDS       T08888                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism fed  Frateuria edaphi Pathway fed03030   DNA replication fed03410   Base excision repair fed03420   Nucleotide excision repair fed03430   Mismatch repair Brite KEGG Orthology (KO) [BR:fed00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     LQ772_15080 (ligB)    03410 Base excision repair     LQ772_15080 (ligB)    03420 Nucleotide excision repair     LQ772_15080 (ligB)    03430 Mismatch repair     LQ772_15080 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:fed03032]     LQ772_15080 (ligB)    03400 DNA repair and recombination proteins [BR:fed03400]     LQ772_15080 (ligB) Enzymes [BR:fed01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      LQ772_15080 (ligB) DNA replication proteins [BR:fed03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      LQ772_15080 (ligB) DNA repair and recombination proteins [BR:fed03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      LQ772_15080 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      LQ772_15080 (ligB)    MMR (mismatch excision repair)     DNA ligase      LQ772_15080 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       LQ772_15080 (ligB) BRITE hierarchy Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_5 HHH DUF3701 RNA_ligase Motif Other DBs NCBI-ProteinID:  UGB45287 LinkDB All DBs Position complement(3229350..3231035) Genome browser AA seq 561 aa AA seqDB search MRQGWRWWALAACLLVRPCAAACPDWHAPRAARELHALHDQLDHWNHAYRTAGHSPVDDT IYDQALARYEDWRACFPDQAPPALAHLADATGPVRAPIAQTGLAKLPDAAAVQAWMRERG NRDLWVQPKADGVAVTLLYVDGRLRQAVSRGDGLHGSDWTADVRRIAAVPKRLPHAPPRV LLQGELVWRLPGHRQAADGGVRARADVAGALARDPLDANAAAHIGLFVWDWPSGPADMRA RLAGLEAMGFGASAALTQPVASLAQVRRWRERWYRQALPFATDGTVLRQGHRPRGTEWQP TPPDWAVAWKYPPAKALATVRAVDFRRGRRGRVAVVLELEPVVLDDRTVRRVSVGSLARW RMLDARPGDQVALSLAGLTIPRFDGVVWRTRERAAVAVPSETTRDGLDCWHPDAGCERQF LARLVWLGGRQGLRIDGMGETTWQALVDARLVRGLLDWLSLTPAQLATVPGIGTARAAHL AQAFERTHAAGFDSWLRALGMPPAGNAVSSDWPALAARDTATWENVPGVGPGRAARLRAF FHHPEVERLAARLHAVGIAGF NT seq 1686 nt NT seq  +upstreamnt  +downstreamnt atgcgacaaggatggcgctggtgggcgttggccgcctgcctgctggtcaggccgtgcgcg gccgcctgtccggactggcatgcgccgcgcgccgcgcgcgagctgcatgccttgcacgac cagctcgaccactggaaccacgcctatcgcacggccggccattcgcctgtcgacgatacg atctacgaccaggcgctcgcccgctacgaagactggcgcgcctgctttcccgaccaggcg ccgcccgcgctggcccacctggccgatgcgaccgggccggtgcgcgcacccatcgcacag accggcctggccaagctccccgacgccgccgccgtgcaggcgtggatgcgcgagcgcggc aaccgcgacctgtgggtgcaaccgaaggccgacggcgtggccgtcacgctgctgtacgtc gatggtcgactgcgccaggcggtcagccgtggcgacggtctgcacggatcggactggact gccgacgtccgacggatcgcggccgtcccgaagcgccttccgcacgcgccgccacgcgtg ctgctccagggcgaactggtctggcgcctgcctggacaccggcaggccgcggacggcggt gtgcgcgcgcgtgcggacgtggccggtgcgctggcacgcgatcctctggacgccaacgcc gctgcgcacatcggcctgttcgtgtgggactggccaagcggaccggccgacatgcgcgcg cgcctggccggactggaagcgatgggtttcggcgccagcgcggcactgacacagccggta gccagcctcgcgcaggtccgtcgctggcgcgagcgttggtaccgccaggcgctgcccttt gccaccgacggtaccgtgctgcgccagggccaccggccgcgaggcacggagtggcagcct acgccgccggactgggcggtcgcctggaaatacccgcccgccaaggcattggcaacggtg cgcgcggtggatttccgccgtggccggcgcggccgcgtcgccgtggtgctggaactggag ccggtggtgctggacgaccgtacggtgcgacgcgtgagcgtcggatcgctggcccgctgg cgcatgctcgacgcccgaccgggcgaccaggtcgcgctctcgctggccggattgaccatt ccccgcttcgacggcgtcgtgtggcgtacccgcgagcgcgccgccgtcgccgtgccctcg gaaaccacgcgcgacggactggattgctggcacccggacgccggttgcgaacgccagttc ctggcccggctggtatggctcggcgggcggcaagggctacgcatcgacggcatgggcgag acgacctggcaggcgctggtcgacgcgcgactcgtgcgcggcctgcttgactggctatcg ctcacgcccgcgcagctggctaccgtaccgggcatcggcaccgcgcgtgccgcgcatctg gcgcaggcgttcgagcgcacccacgcggccggcttcgactcgtggttgcgcgcgctgggg atgccgccggcgggcaacgccgtgtcgagcgattggccggcgctggccgcgcgggatacc gcgacatgggagaacgtgccgggcgtgggtccgggtcgagccgcgcggttgcgggcgttc ttccatcatccggaggtggagcggctcgccgcgcggcttcatgcggtgggcatcgcgggg ttttga

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