Flavobacterium enshiense: LZF87_12335
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Entry
LZF87_12335 CDS
T08644
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
feh
Flavobacterium enshiense
Pathway
feh03030
DNA replication
feh03410
Base excision repair
feh03420
Nucleotide excision repair
feh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
feh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZF87_12335 (ligA)
03410 Base excision repair
LZF87_12335 (ligA)
03420 Nucleotide excision repair
LZF87_12335 (ligA)
03430 Mismatch repair
LZF87_12335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
feh03032
]
LZF87_12335 (ligA)
03400 DNA repair and recombination proteins [BR:
feh03400
]
LZF87_12335 (ligA)
Enzymes [BR:
feh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LZF87_12335 (ligA)
DNA replication proteins [BR:
feh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LZF87_12335 (ligA)
DNA repair and recombination proteins [BR:
feh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LZF87_12335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LZF87_12335 (ligA)
MMR (mismatch excision repair)
DNA ligase
LZF87_12335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZF87_12335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
DUF3322
EcoRI
RNA_lig_T4_1
HNOB
Motif
Other DBs
NCBI-ProteinID:
UOK42092
LinkDB
All DBs
Position
complement(2734407..2736407)
Genome browser
AA seq
666 aa
AA seq
DB search
MDVLQTIQALRDELNQHNYNYYVLDNPTISDYDFDIKLKELQVLEAKHPEYFDENSPTQR
VGGAITKNFETVQHEYRMYSLDNSYSKEDLLDWEKRARKILGDAPLEYTCELKYDGASIN
ISYENGKLKRAVTRGDGFQGDDVTNNIKTIKAVPIKLKGDFPQKFDIRGEIILPFAGFEK
MNQELIEIGETPYANPRNTASGSLKLQDSGEVAKRPLDCLLYSLVGNNLPIATHYEGLEK
ARQWGFKVPTQSRLAKNMDEVLEFINHWDKHRHEMPYETDGVVVKINDLHQQDELGYTAK
SPRWAIAYKFKAEQVSTRLNSISYQVGRTGAITPVANLEPVQLAGTVVKRASLHNADQIE
KLDIRIGDEVFVEKGGEIIPKIVAVDLNKRPQNSEVTNYITHCPECQTPLERKEGEANHY
CPNYYGCPPQIIGRIQHFISRKAMDIEGLGGETVALLYNNDLVTNYADLYELKKEQIIPL
ERMAEKSADNMVKGIENSKNIPFERVLYALGIRYVGETVAKKLAKHYKSIDAIASASLTE
LILVDEIGEKIAQSVVEFFDNLENRAIIDRLKSYGVQLEVLATADTTISDLLSGKTFVVS
GVFEKFSRDDLKKAIEDNGGKVGSSISAKTHFVVAGDNMGPAKLEKANQLNIPIISEDDF
IKMINE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatgttttgcagacgattcaagccctacgggatgaacttaatcagcataattacaat
tattatgtattggataatcccacgatttccgattatgattttgatataaaactcaaagaa
cttcaggtacttgaagcaaaacaccccgaatattttgatgaaaattcacctacccaaaga
gtagggggagccatcacgaaaaacttcgaaactgtccagcatgaataccgcatgtattca
ctggataactcgtattccaaagaagatttactggattgggagaaacgtgcccgtaagatt
ttaggcgatgcaccgcttgaatatacctgcgagcttaaatatgatggtgcatctatcaat
atttcctatgaaaacggaaaactgaaaagagcagtcactagaggggacggatttcaggga
gatgatgtaaccaataatattaaaaccataaaagcggtcccgattaaactgaaaggcgat
tttccgcagaagtttgacatccgcggagaaatcatattgccttttgccggttttgaaaaa
atgaaccaggagctgattgaaattggcgaaactccatatgcaaatcctagaaacacggct
tcaggaagtttaaaattacaagacagtggcgaggtggctaaacgaccgttggattgtttg
ctgtattctttggttggaaataatttgccaatcgctactcattacgaaggactggaaaaa
gcccgtcagtggggttttaaagtgccaactcaatcccgtttggctaaaaatatggatgag
gttcttgaattcattaaccattgggacaaacaccgccatgaaatgccttatgaaactgat
ggggttgtggtgaagataaacgatttgcatcaacaggatgaattaggatatacggcaaaa
tcaccgcgttgggctattgcctataaatttaaagcagaacaagtttcaacccgtttaaat
tcgatttcctatcaggtaggacgaacaggggcaattacaccggttgccaatttggaaccc
gttcagttggcaggaaccgtggtgaaaagagcttcgcttcataatgctgatcagattgaa
aaacttgatattcgtattggtgacgaagtttttgtggaaaaaggaggcgagatcattccg
aaaattgttgcggttgatttgaataaacgcccccagaattcggaagtcacaaattatata
acacattgtccggaatgccagactccgttagaacgtaaagaaggagaggcaaatcactat
tgtccgaattattacggctgcccacctcagatcataggccgtattcagcatttcatttcc
cgtaaggccatggatattgaaggtttgggaggggaaacggtagccttactttataataat
gatttggttaccaattatgcggatttatacgagctgaaaaaagagcagattattccgctg
gaacgtatggctgaaaaatcggccgacaatatggtaaaggggattgaaaattcgaaaaac
attccttttgaacgtgttttatacgctttgggaattcgttatgtgggagaaacggtcgca
aaaaaattggcaaaacattataaatccattgatgcaattgcttctgcttcattaacagag
ctgattttagtcgacgaaataggtgaaaaaatcgcccaaagtgtggttgaattttttgat
aatctagaaaatagggctattattgacaggctgaaaagttacggcgttcaacttgaagta
ttggcaacggctgatacgacaatctcagatcttctttcaggcaaaacctttgtggtttca
ggtgttttcgaaaagttttcacgtgatgatttaaagaaagctatcgaagataacggtgga
aaagttgggagctccatttcggctaaaacccattttgtggttgctggggacaacatgggg
ccagcaaaacttgaaaaagcaaatcagttgaatattccgatcatcagcgaggatgatttt
ataaaaatgataaatgaataa
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integrated database retrieval system
