Ferruginibacter albus: K9M53_00985
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Entry
K9M53_00985 CDS
T07524
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fei
Ferruginibacter albus
Pathway
fei03030
DNA replication
fei03410
Base excision repair
fei03420
Nucleotide excision repair
fei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K9M53_00985 (ligA)
03410 Base excision repair
K9M53_00985 (ligA)
03420 Nucleotide excision repair
K9M53_00985 (ligA)
03430 Mismatch repair
K9M53_00985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fei03032
]
K9M53_00985 (ligA)
03400 DNA repair and recombination proteins [BR:
fei03400
]
K9M53_00985 (ligA)
Enzymes [BR:
fei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K9M53_00985 (ligA)
DNA replication proteins [BR:
fei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K9M53_00985 (ligA)
DNA repair and recombination proteins [BR:
fei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K9M53_00985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9M53_00985 (ligA)
MMR (mismatch excision repair)
DNA ligase
K9M53_00985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K9M53_00985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
IMS_HHH_1
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UAY52284
LinkDB
All DBs
Position
220180..222273
Genome browser
AA seq
697 aa
AA seq
DB search
MYTKEQTQQLQKLTNEWMSSGKADNNTIEQLRDVLRFHEYRYYVLNDPLISDVEYDGLYK
QLENFEKSNPDAITPDSPTQRVGSSLNTSFVTVQHIVPMLSLENSYNADDLIDWDRKARE
LTGLDKVEYCIEPKFDGASISLIYENDLLTRAATRGDGVEGEEITTNIKRIKSVPLSAKF
STYDIEQIEIRGEVMMNKNSFKKYNEQLQEQNLLPLANPRNAASGSLRMKDPKEVAKRNL
EAFLYNVSFLTNKTSNAHTNVKLPTHSSMLEMLWQLGFHSPKAEKKVVKGIDDVIQYVNE
YEYKRDDLPYEIDGMVIKVNDLSLQDKMGMTTHHPRWAIAFKFKARQATSKLIKVEFQVG
RTGSITPVAKIEPVPIGGVTVSSISLFNEDVVREKDLHIGDTVLVERAGDVIPYIVKPLA
ELRDGTEKPIIFPKNCPVCGDELVKPEDEAVWRCVNINCKAQVVERIIHFVSKDAMDIKS
FGEANVRKFYELGLLKDVPGIYQLDFDVISKLEGFGKKSIDNLHTAIENSKTQPLHRLIF
ALGIRYVGETTAKTLAHKITNLLDLKNFSEEQLQQFDDVGVKVAASIYQFFGNKDNIEML
HKLQQLGVQLESSKQQLAVGDSLAGKMFLFTGTLEKLKRSDAEELVEKNGGSIVGSVTSK
LNYLVVGADAGSKLEKAKKIPAIKIISEEDFIKMIPK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtatacaaaagaacaaactcagcagcttcaaaagcttaccaatgaatggatgtcatcc
ggcaaagccgataacaatactatagaacaattaagagacgtacttcgctttcatgaatac
cgttattatgttttaaacgatccattaattagcgatgtagaatacgatggtttatataaa
caattagaaaattttgaaaaaagcaaccccgatgccataactcccgattctcctacacag
agggtaggcagtagtttaaatacttcatttgttacggtacagcatattgttcctatgtta
agcctcgagaacagttacaatgctgacgacctcattgattgggatagaaaagcaagggaa
ctaacgggattggataaggtggaatattgtattgagcccaaatttgatggagccagcatt
tctcttatctatgaaaacgacttactaacgagagcggctacacgaggtgatggagtggaa
ggcgaagaaataaccaccaacatcaagcgaataaagtcagtgccgctgtcagccaaattt
tctacttacgatattgagcaaattgaaattcgtggggaagtgatgatgaacaagaatagc
tttaaaaaatataacgaacaattgcaggagcaaaacctgctgccattggcaaatccacgc
aatgcagcatccggctctttgcgtatgaaagatccaaaagaagttgcgaaaagaaacctc
gaagcatttttatataatgtaagttttcttacaaataaaacttccaatgcacacaccaat
gtgaaattgccaacacattcatccatgctggaaatgttgtggcaattaggttttcatagt
cctaaagcagaaaaaaaagtagtgaaaggaattgatgacgttattcaatacgtaaatgaa
tatgaatacaagcgggatgatctgccatatgaaatagatggcatggtgattaaggtaaat
gatctgtcactgcaggacaaaatgggaatgacaacgcatcatccgcgttgggcaattgct
tttaagtttaaagcaaggcaggcaaccagtaaattaataaaagtagaattccaggttgga
cgcacaggcagcattacaccggtggctaaaatagagccggtaccgattggcggtgtcaca
gtttcttctatctctctttttaacgaagatgtggtgcgtgaaaaagatttgcatattggc
gatacggttttggtagaacgtgcgggtgatgtgattccatatattgtaaaacctttggcg
gagctaagagatggaacagaaaagccgatcatctttccaaaaaattgccctgtttgtggt
gatgaactggttaagcctgaagatgaagcagtgtggcgttgcgtaaatatcaattgtaaa
gcgcaggtggtagaacgcattattcattttgtaagtaaagatgcaatggatattaaaagc
tttggtgaggccaatgttcgcaagttttatgaattgggtctgctaaaagacgttccgggt
atttaccaattggattttgatgtcatcagtaaactggaagggtttggtaaaaaatctatc
gataatcttcacactgctattgaaaattctaaaacgcaaccgttacacaggttaatattt
gcactgggtattcgttacgttggagaaactactgccaaaacactggcacataagatcacc
aacttgcttgatctgaaaaacttttcagaagaacaattgcaacagtttgatgatgttggc
gtaaaagttgcagctagtatttaccagttctttggtaataaagataatatcgaaatgctg
cacaagttgcagcaattaggtgttcaattggaaagcagtaaacaacaattagccgttggc
gatagtttggcaggtaaaatgtttctgtttaccggaacgcttgaaaaactaaaacgcagc
gatgcggaggagttggttgaaaagaacggtggcagcatagtcggcagcgttaccagcaaa
ttaaattacctggtagtgggtgccgatgcaggaagcaaattggaaaaagccaaaaagatc
ccagccataaagatcattagcgaagaagattttattaaaatgattccgaaatag
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