KEGG   Flavivirga eckloniae: C1H87_03545
Entry
C1H87_03545       CDS       T05284                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
fek  Flavivirga eckloniae
Pathway
fek03030  DNA replication
fek03410  Base excision repair
fek03420  Nucleotide excision repair
fek03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fek00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C1H87_03545
   03410 Base excision repair
    C1H87_03545
   03420 Nucleotide excision repair
    C1H87_03545
   03430 Mismatch repair
    C1H87_03545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fek03032]
    C1H87_03545
   03400 DNA repair and recombination proteins [BR:fek03400]
    C1H87_03545
Enzymes [BR:fek01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C1H87_03545
DNA replication proteins [BR:fek03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C1H87_03545
DNA repair and recombination proteins [BR:fek03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C1H87_03545
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C1H87_03545
   MMR (mismatch excision repair)
    DNA ligase
     C1H87_03545
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C1H87_03545
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT BRCT_2 HHH Auto_anti-p27 5_3_exonuc
Other DBs
NCBI-ProteinID: AUP77839
UniProt: A0A2K9PL90
LinkDB
Position
complement(846191..848188)
AA seq 665 aa
MNNKELIEALREELREHNYNYYVLDNATISDYEFDIKLKELQELEAKYPEYFDANSPTQR
VGGTVTKNFETIQHEYRMYSLDNSYSKEDLEDWETRIKKLVDGDIQYICELKYDGASISL
TYENGNLVKAVTRGDGFQGDNVTANIKTIKSVPLQLKGSDYPAKFDIRGEIILPFDGFNK
MNEERIEVGEEPYRNPRNTASGSLKLQDSAEVAKRPLECFLYNITGTNLNIKTQQESLEK
ARAWGFKVPDAAKLVNSIDEVLEFVDYWNMNRHDLPYETDGVVIKVNDLFQQEELGYTAK
APRWAMAYKFKAEQASTRLNSITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIE
KLDVRVGDEVYVEKGGEIIPKILGVDLSKRNELSEPTQYITHCPECETELVRQEGEAQHY
CPNYNGCKPQIIGRIQHFISRKAMDIDGLGGETVALLVTEGLISNYSDLYELTKEEVIPL
ERMAEKSADNLIQGIELSKNIPFERVLFALGIRYVGETVAKKLAKHYKSIDAIADATQED
LVNVDEIGVKIAESVSIFFNSEINLHIINRLKKFGVQLELSAEQLIGQTNILDGDVVVVS
GVFETVSRNELKKLIEDNGGKVSSSISSKTSYIVAGSNMGPSKKEKAAKLEIPLLSELEF
LQKIQ
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgaacaataaggaattaattgaggctctaagagaggagttacgtgagcataattataac
tactacgtattagacaatgctaccatctctgattacgaattcgatataaaacttaaagag
cttcaggaacttgaagcaaaatacccagaatattttgatgctaattcaccaacacagcgt
gtaggaggaactgttaccaagaactttgaaacgatacagcatgagtatcgtatgtattct
ttagacaactcctattcaaaagaggatttggaggattgggaaacacgaattaaaaaactg
gtagatggcgatattcaatatatttgtgaattaaagtatgatggcgcctctattagttta
acttatgagaatggtaacttggtaaaagcggttacccgcggcgatgggtttcagggagac
aatgttacggcaaacattaagaccataaaatctgtaccgttgcagttaaaaggtagtgac
tatcctgctaaatttgatattagaggcgaaattatattgcctttcgatggttttaataaa
atgaatgaggaacgtattgaagtaggagaggaaccttatagaaatcccagaaatacggct
tcgggaagtttaaagctacaagatagtgctgaagttgccaaacgaccgttagaatgtttt
ctatataatataacaggtacaaacttaaatattaagacacaacaagagagtttagaaaaa
gcaagggcatggggttttaaagtacctgatgcagcaaaacttgttaattctattgatgag
gttttggaatttgtggattattggaatatgaatcgccatgatttaccctatgaaacagat
ggtgttgttataaaagtaaacgatttatttcagcaagaagagttggggtatacggcaaaa
gcaccaaggtgggctatggcttataagtttaaggcagagcaagcttcaacaagattaaac
agcattacatatcaggtgggacgtacaggagctattacacctgttgctaacctcgaacct
gttgaattggcaggaacaaccgtaaaacgtgcgtcactgcataatgccgatcaaatagag
aagttggatgtaagagtaggagatgaggtgtatgtggaaaagggaggagagattattcca
aaaattcttggggttgatttaagtaaacgaaatgaattatcggaaccaactcaatacatt
acccattgtccggagtgcgaaacagaacttgtaagacaagaaggggaagctcagcattat
tgtccgaattacaatggctgtaagccacaaattattggtagaatccagcattttatatct
agaaaagccatggatattgatggcctaggaggtgaaactgtggcgcttttggtaacggag
ggcttaatttctaattattcagatttatatgaattaactaaagaagaagtgattccttta
gaacgcatggcagaaaagagtgccgataatttaattcaaggtatagagctgtctaagaac
attccttttgagcgtgttctgtttgccttaggtatcaggtatgtaggggaaacggttgct
aaaaaattggcaaagcattataagagtattgatgctattgcagatgcaacacaggaagac
ttggtaaatgtcgacgagattggagttaaaatagcagaaagtgtaagtatattttttaat
tcggaaataaatttgcatataattaataggttaaagaaatttggagttcaattagagctg
tctgccgaacaattaatcggtcaaactaatatattagatggtgatgtggttgtagtgtct
ggcgtttttgaaaccgtgtctagaaatgagcttaaaaaactcattgaagataatggcgga
aaagttagcagttctatctcatctaaaacaagttatatagttgcaggaagcaatatgggg
cccagtaaaaaggagaaagctgccaagctggaaatccctttgttaagcgaacttgaattc
ctacaaaaaatacaataa

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