Ferrovibrio terrae: FNB15_13360
Help
Entry
FNB15_13360 CDS
T06089
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fer
Ferrovibrio terrae
Pathway
fer03030
DNA replication
fer03410
Base excision repair
fer03420
Nucleotide excision repair
fer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FNB15_13360 (ligA)
03410 Base excision repair
FNB15_13360 (ligA)
03420 Nucleotide excision repair
FNB15_13360 (ligA)
03430 Mismatch repair
FNB15_13360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fer03032
]
FNB15_13360 (ligA)
03400 DNA repair and recombination proteins [BR:
fer03400
]
FNB15_13360 (ligA)
Enzymes [BR:
fer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FNB15_13360 (ligA)
DNA replication proteins [BR:
fer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FNB15_13360 (ligA)
DNA repair and recombination proteins [BR:
fer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FNB15_13360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FNB15_13360 (ligA)
MMR (mismatch excision repair)
DNA ligase
FNB15_13360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FNB15_13360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QDO98195
UniProt:
A0A516H375
LinkDB
All DBs
Position
2742120..2744225
Genome browser
AA seq
701 aa
AA seq
DB search
MSRQRAKPVADLSPRQASLEHARLEEEIAVHDKRYHQQDAPTVSDAEYDALKKRLLELET
TFPELKTLTGVSSRVGAAPAAGFAKVKHSKPMLSLDNAFAEEDVADFLGRIRRFLNLKDG
DDLALVAEPKIDGLSASLRYENGELVRAATRGDGQEGEDVTANIRTLKQDVPHKLSGKGW
PDVLEVRGEVYMTRADFLKLNEAQEAASQKIFANPRNAAAGSLRQLDASITAKRPLRFFG
YSWGEVSAPFTGKLSDVRQKLDSWGFTLNPHVELCHSVDDLMAYYNDIGAKRAKLAFDID
GVVYKVDRLDWQERLGFISRSPRWAVAHKFPAEQAQTVLENIDIQVGRTGTLTPVAKLRP
VNVGGVLVSNATLHNEDEIRRKDVRIGDTVVIQRAGDVIPQVVSVVLDKRHKGAKEYEYP
TKCPVCGQPAEREVDASGAEDVRRRCTGGVSCPAQAMEGLRHFVSRNAFDIEGIGEKQIA
AFYEWGWIKEPADIFKLPKQHSADLRKKEGYGDTSVDNLIRSIDQRRSIGFDRFLFALGI
RHVGQERARLVAMHYETPQRWLAAMDEAEARHGEAWGDLNSIDKMGDVVAEAILGFATRK
QSRNVIDHLLKELTEVVPPAKPTTDSAVAGKTVVFTGSLEKFTRDEAKARALSLGAKVAG
SVSKKTDYLVAGPGAGSKLAEAQKHGVAVLSEDDWLALIGG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcagcgtgcgaaaccggtggccgatctcagcccccgtcaggccagcctggag
catgcccggttggaagaagagattgccgtccatgacaagcgctatcaccagcaggatgcg
ccgacggtgtcggacgccgagtatgatgcgctgaaaaagcgcctgctcgaactcgaaacg
acattccccgagctcaagaccctgaccggtgtctccagccgggtcggcgcggcccccgcc
gccggcttcgccaaggtgaagcacagcaaaccgatgctgtcgctcgacaatgctttcgcc
gaagaagatgtcgccgattttctcggtcgcatccgccgcttcctcaacctgaaggacggc
gacgacctcgcgctggtggccgagccgaagatcgacggtctgtcggctagcctgcgctac
gagaatggcgaactggtgcgcgccgccacccgcggcgacggccaggaaggcgaggatgtc
accgccaatatccgcacgctgaagcaggatgtgccacacaagctgagtggcaaaggctgg
cccgacgtgctggaggtgcgtggcgaagtctatatgacgcgcgccgatttcctgaaactg
aacgaagcgcaggaagccgccagccagaaaatctttgccaatccgcgcaatgccgcggca
ggcagtctgcgtcagcttgatgcttcgatcaccgcgaaacgcccgctgcgcttcttcggc
tacagctggggcgaggtgtccgcgcctttcaccggcaagctcagcgatgtgcgccagaaa
ctcgacagctggggcttcacgctcaatcctcatgtggaactctgccacagcgtcgacgac
ctgatggcttattacaacgacatcggcgcgaagcgcgccaaactggccttcgacatcgat
ggcgtcgtctacaaggtcgatcgcctcgactggcaggagcggctcggctttatcagtcgt
agcccgcgctgggcggtggcgcataaatttcccgccgaacaggcgcagaccgtgctggag
aatatcgatatccaggtcggccgcaccggcacgctcacgccggtcgccaagctcaggccg
gtcaatgtcggcggcgtgctggtatcgaatgccacgctgcacaatgaagacgagatcagg
cgcaaggatgtacgcatcggcgacacggtggttatccagcgcgccggcgatgtgatcccg
caggtggtcagcgtcgtgctggacaagcggcacaagggcgcgaaggaatatgaatacccg
accaaatgcccggtctgcggccagccggccgagcgcgaggtggatgcgtcaggcgccgaa
gatgtgcggcggcgatgcaccggtggtgtgtcctgcccggcccaggcgatggaaggcctg
cgccatttcgtctcgcgcaatgccttcgatatcgagggtatcggcgagaagcagatcgcg
gccttttacgaatggggctggatcaaggaaccggccgatatcttcaaactgccgaagcag
cattccgccgacctgcgcaagaaggaaggctatggcgatacctcggtcgacaacctgatc
cggtctatcgaccagcgccgcagcattggtttcgaccgtttcctgttcgcgcttggcatc
cgccatgtcgggcaggagcgcgcgcggctggtggcgatgcattacgagacgccgcagcgc
tggctggccgccatggacgaggccgaggcgcgccatggcgaggcctggggtgacctcaac
agcatcgacaagatgggcgatgtggtggccgaggccattcttggttttgccacccgcaag
cagagtcgcaatgtgatcgatcatctgctgaaagaactcaccgaggtcgtgccgccggcg
aagccgaccacagattccgctgtcgccggcaagacggtcgtgttcaccgggtcgctggag
aaattcacccgcgacgaggccaaggcgcgtgcgctcagcctcggcgccaaggtggctggt
tcggtgtcgaagaagaccgactatctcgtcgccggtcccggcgccggctcgaaactggcc
gaggcgcagaagcatggtgtggcggtgttgagcgaagatgactggctcgcgctgatcggc
gggtaa
DBGET
integrated database retrieval system
