Ferrimonas lipolytica: HER31_08275
Help
Entry
HER31_08275 CDS
T06529
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fes
Ferrimonas lipolytica
Pathway
fes03030
DNA replication
fes03410
Base excision repair
fes03420
Nucleotide excision repair
fes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HER31_08275 (ligA)
03410 Base excision repair
HER31_08275 (ligA)
03420 Nucleotide excision repair
HER31_08275 (ligA)
03430 Mismatch repair
HER31_08275 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fes03032
]
HER31_08275 (ligA)
03400 DNA repair and recombination proteins [BR:
fes03400
]
HER31_08275 (ligA)
Enzymes [BR:
fes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HER31_08275 (ligA)
DNA replication proteins [BR:
fes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HER31_08275 (ligA)
DNA repair and recombination proteins [BR:
fes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HER31_08275 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HER31_08275 (ligA)
MMR (mismatch excision repair)
DNA ligase
HER31_08275 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HER31_08275 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
RUBY_RBDX
HHH
Zn_ribbon_PF0610
DUF4796_N
Bap31_Bap29_C
Motif
Other DBs
NCBI-ProteinID:
QIZ76869
UniProt:
A0A6H1UE16
LinkDB
All DBs
Position
complement(1765220..1767250)
Genome browser
AA seq
676 aa
AA seq
DB search
MSEQAQQRIEQLCQQLNEHNHQYYVLDNPTIPDAEYDRLMRELQQLEQDFPELLRQDSPS
QRVGGEPLSQFNSVAHLKPMLSLDNAMNEEEFSAFHKRLQERLGSNDIHYCAEPKLDGIA
VSLLYRNGLLERAATRGDGMTGEEITHNVKTIGSVPLRLHGGKFPELVEVRGEAFMPKAG
FDEMNRKAHAAGEKTFVNPRNAAAGSLRQLDSRITANRPLAFYAYAMGVVEGERDALAQG
HFEQLQQLKTWGLPVSPLVELAAGEEGGLGYFRRVNEERASLPYEIDGVVIKVNNLEQQH
QLGFVARAPRWAIACKFPAEEELTTLNDVEFQVGRTGAVTPVARLEPVFVGGVTVSNATL
HNGDEIARLGVKIGDTVIIRRAGDVIPQIVSVVLDRRPVDAGDIEIPSQCPVCQSKVERF
EGEAVARCSGGLFCEAQRKEAIKHFASRKAMDVDGLGDKLVELLVDKELIKTPADLFGLS
ASTLTMLPRMGMKSAEKLIKSLQAARETTLPRFLYSLGIREVGEATAANLARHFKTLEAL
AAADVDALIEVDEVGEIVAKHVYYFFRQPHNQEVIAALIDVDGANLHWAAIEEVAEDQQP
LKGQTWVLTGTMSQLGRADAKAALEALGAKVSGSVSKNTTTLVAGEKAGSKLTKATDLGV
AVLDEQGLLALLASHS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacaagcccaacaacgtatcgagcagttgtgccagcaactaaatgaacataac
caccagtattatgttcttgataatccgactattccagatgcggaatatgaccgtttgatg
cgtgaattgcagcagttggaacaagactttccagaactactgcgccaagattctcccagc
cagcgtgttggtggtgaaccattatctcaatttaactcggtggctcacttaaagccgatg
ttgtcgcttgacaacgcgatgaatgaagaggagttcagtgctttccacaaacgtttgcaa
gagcgtttgggcagcaatgatatccattactgtgctgaacccaagctcgatggcattgcg
gttagcttgctgtatcgcaatggcctactagaacgtgccgccactcgcggtgatggcatg
accggcgaagagatcacccataacgttaaaaccatcggctcggtgccgctgcgtttgcat
ggcggcaagttccctgaactggttgaggttcgtggtgaagccttcatgcctaaagctggc
tttgatgagatgaaccgcaaggcccacgctgctggcgaaaagacctttgttaatcctcgt
aatgctgccgctggcagtctgcgtcaactcgatagtcgcatcactgcgaaccgaccgttg
gcgttttacgcgtatgcgatgggggtcgttgaaggagagcgcgatgcgctagcccaaggt
cactttgagcagttgcagcagctcaaaacgtgggggttgccggtttctcctttggttgag
ctagccgctggcgaggagggtggtttaggttatttccgccgagttaatgaagaacgtgca
agcttgccgtacgaaatcgatggcgtcgttatcaaggttaacaaccttgaacagcagcac
cagctcggctttgttgctcgtgcaccacggtgggctattgcctgtaaattccctgccgaa
gaggagctcactacccttaatgatgttgagtttcaggttggtcgaaccggagcggttacg
ccagtcgcccgcttagagccagtgtttgtgggcggcgtgaccgtgtccaacgctaccttg
cacaatggcgatgagattgcgcgtctcggggtaaaaatcggcgatacagtgatcatccgt
cgcgctggtgacgtaatcccgcagattgtttctgtggtgctagatcgccgcccagtcgat
gccggtgatattgagatccccagccaatgtccggtgtgccagtcgaaggtagaacgattt
gagggtgaagcggttgcccgttgttctggcggattgttctgcgaagcgcaacgcaaagaa
gcaattaaacattttgcttcacgtaaagccatggacgttgatggcttaggcgacaagttg
gttgaactcctcgttgacaaagaactgataaaaaccccggccgatctatttggcttatcg
gcatcaaccttgaccatgttgccacgcatggggatgaaatccgcagaaaaactgattaag
tctctgcaagccgctcgtgaaacaacccttcctcgctttctatacagcttaggtatccgt
gaagtgggcgaggcgactgcggctaaccttgcgcgtcactttaaaaccttggaggcattg
gcagcagcggatgttgatgccctaattgaggttgatgaagtgggtgaaattgtcgctaag
catgtctactacttctttcggcagccacacaatcaggaggtgatagccgctttgatcgat
gtggatggtgctaatctgcactgggccgctattgaagaggtagctgaggaccagcagcca
ttgaaaggccagacttgggtgctaaccggtaccatgagccaactcgggcgtgctgatgct
aaggcggcattagaagccttaggtgccaaggtatccggcagcgtatctaaaaataccacc
accctagttgccggtgaaaaggccggttctaagctaaccaaggctaccgatttaggagtg
gcagtattggatgagcaaggcttgctggcattattggcgagccattcgtaa
DBGET
integrated database retrieval system
