Flavobacterium faecale: FFWV33_13035
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Entry
FFWV33_13035 CDS
T05515
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ffa
Flavobacterium faecale
Pathway
ffa03030
DNA replication
ffa03410
Base excision repair
ffa03420
Nucleotide excision repair
ffa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ffa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FFWV33_13035
03410 Base excision repair
FFWV33_13035
03420 Nucleotide excision repair
FFWV33_13035
03430 Mismatch repair
FFWV33_13035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ffa03032
]
FFWV33_13035
03400 DNA repair and recombination proteins [BR:
ffa03400
]
FFWV33_13035
Enzymes [BR:
ffa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FFWV33_13035
DNA replication proteins [BR:
ffa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FFWV33_13035
DNA repair and recombination proteins [BR:
ffa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FFWV33_13035
NER (nucleotide excision repair)
GGR (global genome repair) factors
FFWV33_13035
MMR (mismatch excision repair)
DNA ligase
FFWV33_13035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FFWV33_13035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
HNOB
Auto_anti-p27
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AWG22381
UniProt:
A0A2S1LFE5
LinkDB
All DBs
Position
3045364..3047364
Genome browser
AA seq
666 aa
AA seq
DB search
MDMLPQILLLREELSQHNHNYYVLDNPTISDFDFDTKLKELQELEQKNPQFFDLNSPTQR
VGGAITKNFATVAHEQRMYSLDNSYSKEDLMDWEKRIEKQLGEVPLEYTCELKYDGASMS
ITYENGRLIRAVTRGDGFQGDDVTNNVKTIRSIPLQLKGNYPPKFDIRGEIILPFKGFEK
MNQDLIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYSIVGDNLPFETQYDGLET
ARKWGFKVPAASKLAKNLDEVFEFIDYWDVHRHELPYETDGVVVKLNSRQYQDELGYTAK
SPRWAMAYKFKSEQVSTVLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRVWDTVFVEKGGEIIPKIIAVDLTERSTTAEQTKYITHCPECETELVRSEGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFTNGLVRNYADLYELTVAQIIPL
ERMAQKSAENLVKGVAESKNIPFERVLYALGIRFVGETVAKKLAKHYKTIDALAQATLMD
LVLVDEIGERIAQSVIDFFEKSENRLIIERLKEKGVQFEVVEKVNLNATEILVGKVFVVS
GVFTEFSRDDLKKAIEDNGGKVGSSISTKTDYVVAGDNMGPAKLDKASKLNIPIISETDF
MAMIKG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatatgctacctcaaatacttttgttaagagaagaactcagtcaacataatcataat
tattatgtgcttgacaatcccacgatttctgattttgattttgataccaaattaaaagag
cttcaggaactcgagcaaaagaatccacaattttttgatctcaattcgccaactcaacgt
gtaggaggagcaattactaaaaattttgccaccgtagctcatgagcagcgcatgtattcg
ctggataattcttattccaaagaagatttaatggactgggaaaaacgtatcgaaaaacaa
ttgggagaggtgcctttggaatatacatgtgagttgaaatacgatggtgcttctatgagt
atcacctatgaaaacggtcgattaattcgcgctgttacgcgtggagatggatttcaaggt
gatgatgtgacgaacaatgttaaaacaatacgctctattccgttgcagttgaaagggaat
tatcctccaaaattcgacattcgtggcgaaatcatattaccattcaaagggttcgaaaaa
atgaaccaagatttaatcgaaataggagagacgccttactccaatccaagaaatacagca
tctggaagtttaaaattgcaagatagcgcagaagtagccaagcgtcctttggattgtttg
ttatactctattgtgggagataatttgccttttgaaacccagtacgatggattagaaaca
gccagaaaatggggtttcaaagtacctgctgcatccaaattggccaagaatttagacgaa
gtttttgaatttattgattattgggatgttcaccgccatgaattaccctatgaaacagat
ggtgtagtagtcaaattgaacagccgtcaataccaagatgagttaggatatacagccaaa
tcacctcgatgggcaatggcttataaatttaaatcagaacaggtttctacggttttgaat
tcgatttcataccaagtaggtcgaacgggtgcgattacgccagtcgctaatttggaaccg
gtgcaattggcgggaacaattgtaaaaagagcttcgttacataatgctgaccaaatcgaa
aaattggacatacgagtatgggacactgtgtttgttgaaaaaggtggagagattattcct
aaaattatagcagttgacctaacggagcgatctacaactgcggagcaaacaaagtatatt
acccattgcccagaatgtgaaaccgaattggtacgatcagaaggagaagcaaatcattat
tgccccaatttttatggttgtccaccgcaaattattggccgaattcagcattatatttcg
agaaaagccatggatattgaagggttaggtggcgaaaccgtggcgttgttgtttactaat
ggtttagttcgaaattatgcggatttgtatgagttgaccgtagctcaaattattcctctg
gaacgaatggcgcaaaaatcggcagaaaatctagtaaagggcgtagcagaatcgaaaaat
attccgtttgaacgtgttttgtatgcattgggaattcgatttgtaggtgaaacggtcgct
aaaaaactagcaaaacattataaaactatcgatgctttggctcaagctactttgatggac
ttagtattggtagatgaaattggagaacgaatagctcaaagtgtcattgattttttcgaa
aagtcagaaaacagattgattatcgaacgcttgaaagaaaaaggtgttcaatttgaggta
gtcgaaaaagtaaacttaaatgctaccgaaattctagtaggtaaagtttttgtagtttct
ggagtttttacagagttttcgcgtgacgatttgaaaaaagcaattgaagataatggaggt
aaagtaggtagttctatttcgacaaaaaccgattatgtggtagcgggtgataatatggga
ccagcaaaactggataaagccagcaaattaaatatcccgattatctctgaaaccgatttt
atggcgatgataaaagggtaa
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