Flavobacterium fluviale: HYN86_12645
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Entry
HYN86_12645 CDS
T07714
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ffl
Flavobacterium fluviale
Pathway
ffl03030
DNA replication
ffl03410
Base excision repair
ffl03420
Nucleotide excision repair
ffl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ffl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYN86_12645
03410 Base excision repair
HYN86_12645
03420 Nucleotide excision repair
HYN86_12645
03430 Mismatch repair
HYN86_12645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ffl03032
]
HYN86_12645
03400 DNA repair and recombination proteins [BR:
ffl03400
]
HYN86_12645
Enzymes [BR:
ffl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYN86_12645
DNA replication proteins [BR:
ffl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYN86_12645
DNA repair and recombination proteins [BR:
ffl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYN86_12645
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN86_12645
MMR (mismatch excision repair)
DNA ligase
HYN86_12645
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYN86_12645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
EcoRI
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
AXB57394
UniProt:
A0A344LU02
LinkDB
All DBs
Position
2871887..2873893
Genome browser
AA seq
668 aa
AA seq
DB search
MSIQETIQTLRNELNQHNYNYYVLDNATISDYDFDIKLKELQDLESKHPEFFDENSPTQR
VGGAITKNFKTIAHQYRMYSLDNSYSKEDLLDWENRIQRVLGNVKLQYTCELKYDGASIS
ITYENGKLVQALTRGDGFQGDEVTNNIKTIKSIPLHLKGNYPEKFDIRGEIILPFKGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYFVTGNNLPFSSQFEGLES
ARNWGFKVPKEAKLVNNMQEVFDFIDYWDVHRHNLPYETDGVVIKVNSIQHQEELGYTAK
SPRWAIAYKFKSEQVSTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRVNDTVFVEKGGEIIPKIIAVDLAKRPENSEVTHYISYCPECQTELVRNVGEANHY
CPNFYGCPPQIIGRVQHFISRKAMDIEGLGGETVALLFKNDLVHNYADLYELKVEDILHL
ERMAQKSAENLVNGVQKSKEIPFESVLFALGIRFVGETVAKKLAKHYKNIDALSRASLMD
LILVDEIGERIARSVVEFFENEENQKIIERLKNYGVQFQIEERVNPNATEKFVGKTFVVS
GVFSQFSRDELKKAIEDNGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNITILSEEDF
INKLNDSE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcattcaagaaaccattcaaacattacgaaatgaacttaatcaacacaattacaac
tattatgtgttagataatgccacaatttcagattatgattttgatataaaactgaaagaa
cttcaagatttagaaagcaagcatccagaattttttgatgaaaactcaccaacgcaaaga
gtcggtggtgctattaccaaaaattttaaaacaatagcacatcaatatagaatgtattct
ttggataattcttattctaaagaagaccttctggattgggaaaatcgtattcaaagagtt
ctcggaaacgttaagctgcaatatacctgcgaattaaaatatgatggagcctctatcagt
ataacatatgaaaacggaaaattagttcaggctttaacgcgtggagacggctttcaaggt
gatgaggtaactaataatattaaaactataaaatcaatcccgcttcatttaaaaggtaat
tatcctgaaaaatttgatattcgaggagaaataattctgccattcaaaggttttgaaaag
atgaatcaggaattaatcgaaattggcgaaactccttactcaaacccaagaaataccgct
tcaggaagtttaaaattacaagatagtgctgaggttgccaaacgtccattagaatgtctt
ctttattttgtgactggaaataatttgccattttcatcacaatttgaaggattggaatct
gctagaaactggggattcaaagtccctaaagaagcaaaattagtcaataatatgcaagaa
gtttttgactttatcgattattgggatgttcacagacacaatcttccttacgaaacagat
ggtgttgtaattaaagtaaatagcattcagcatcaggaggaattaggttataccgcaaaa
tcaccgcgctgggcaatagcttacaaattcaaatcagaacaagtttcaactaagttaaag
tcaatttcttatcaggtaggaagaactggcgctattacacctgttgctaatttagagcct
gtgcaattggcaggaacaattgtaaaaagagcgtctctccataatgcagaccaaatcgag
aaattagatattagagtaaatgatactgtttttgttgaaaaaggcggcgaaattattcca
aaaatcattgcagtagatttggccaagcgtccagaaaattcagaagtaactcattatatt
tcatattgtccagaatgccagactgaattggtacgaaatgttggtgaagccaatcattat
tgtcctaatttctacggttgtccaccgcagattataggcagagttcaacatttcatttct
agaaaagctatggatattgaaggtcttggcggagaaactgttgcacttctttttaaaaat
gatttagtgcacaattacgcagatttgtacgaattgaaagtagaagatattctgcattta
gaaagaatggctcaaaaatcagctgaaaatctggtaaatggagttcagaaatcaaaagaa
attccgttcgaaagtgtattatttgcactaggaattcgttttgttggagaaactgtggcc
aaaaaattagccaagcattataaaaatattgacgctttaagccgagcttcgttaatggat
ttaattttagttgatgaaattggagaaagaattgccagaagcgttgttgaattttttgaa
aatgaagaaaatcaaaaaattattgagcgcttaaaaaattacggagttcaatttcaaatt
gaagaaagagtaaatccaaacgcgacagaaaaatttgttggaaaaacctttgtggtttct
ggcgtatttagtcagttttcaagagatgaattgaaaaaagccattgaagataatggtgga
aaagtgggaagctcaatttctgcaaagacagattttgttgtagcaggagataatatggga
ccggcgaaattagaaaaagcaactaaattaaatatcactatattatcagaagaagatttt
attaacaaattaaatgacagcgaataa
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