KEGG   Flavobacterium fluviale: HYN86_12645
Entry
HYN86_12645       CDS       T07714                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ffl  Flavobacterium fluviale
Pathway
ffl03030  DNA replication
ffl03410  Base excision repair
ffl03420  Nucleotide excision repair
ffl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ffl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HYN86_12645
   03410 Base excision repair
    HYN86_12645
   03420 Nucleotide excision repair
    HYN86_12645
   03430 Mismatch repair
    HYN86_12645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ffl03032]
    HYN86_12645
   03400 DNA repair and recombination proteins [BR:ffl03400]
    HYN86_12645
Enzymes [BR:ffl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HYN86_12645
DNA replication proteins [BR:ffl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HYN86_12645
DNA repair and recombination proteins [BR:ffl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HYN86_12645
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HYN86_12645
   MMR (mismatch excision repair)
    DNA ligase
     HYN86_12645
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HYN86_12645
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 EcoRI TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: AXB57394
UniProt: A0A344LU02
LinkDB
Position
2871887..2873893
AA seq 668 aa
MSIQETIQTLRNELNQHNYNYYVLDNATISDYDFDIKLKELQDLESKHPEFFDENSPTQR
VGGAITKNFKTIAHQYRMYSLDNSYSKEDLLDWENRIQRVLGNVKLQYTCELKYDGASIS
ITYENGKLVQALTRGDGFQGDEVTNNIKTIKSIPLHLKGNYPEKFDIRGEIILPFKGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYFVTGNNLPFSSQFEGLES
ARNWGFKVPKEAKLVNNMQEVFDFIDYWDVHRHNLPYETDGVVIKVNSIQHQEELGYTAK
SPRWAIAYKFKSEQVSTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRVNDTVFVEKGGEIIPKIIAVDLAKRPENSEVTHYISYCPECQTELVRNVGEANHY
CPNFYGCPPQIIGRVQHFISRKAMDIEGLGGETVALLFKNDLVHNYADLYELKVEDILHL
ERMAQKSAENLVNGVQKSKEIPFESVLFALGIRFVGETVAKKLAKHYKNIDALSRASLMD
LILVDEIGERIARSVVEFFENEENQKIIERLKNYGVQFQIEERVNPNATEKFVGKTFVVS
GVFSQFSRDELKKAIEDNGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNITILSEEDF
INKLNDSE
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgagcattcaagaaaccattcaaacattacgaaatgaacttaatcaacacaattacaac
tattatgtgttagataatgccacaatttcagattatgattttgatataaaactgaaagaa
cttcaagatttagaaagcaagcatccagaattttttgatgaaaactcaccaacgcaaaga
gtcggtggtgctattaccaaaaattttaaaacaatagcacatcaatatagaatgtattct
ttggataattcttattctaaagaagaccttctggattgggaaaatcgtattcaaagagtt
ctcggaaacgttaagctgcaatatacctgcgaattaaaatatgatggagcctctatcagt
ataacatatgaaaacggaaaattagttcaggctttaacgcgtggagacggctttcaaggt
gatgaggtaactaataatattaaaactataaaatcaatcccgcttcatttaaaaggtaat
tatcctgaaaaatttgatattcgaggagaaataattctgccattcaaaggttttgaaaag
atgaatcaggaattaatcgaaattggcgaaactccttactcaaacccaagaaataccgct
tcaggaagtttaaaattacaagatagtgctgaggttgccaaacgtccattagaatgtctt
ctttattttgtgactggaaataatttgccattttcatcacaatttgaaggattggaatct
gctagaaactggggattcaaagtccctaaagaagcaaaattagtcaataatatgcaagaa
gtttttgactttatcgattattgggatgttcacagacacaatcttccttacgaaacagat
ggtgttgtaattaaagtaaatagcattcagcatcaggaggaattaggttataccgcaaaa
tcaccgcgctgggcaatagcttacaaattcaaatcagaacaagtttcaactaagttaaag
tcaatttcttatcaggtaggaagaactggcgctattacacctgttgctaatttagagcct
gtgcaattggcaggaacaattgtaaaaagagcgtctctccataatgcagaccaaatcgag
aaattagatattagagtaaatgatactgtttttgttgaaaaaggcggcgaaattattcca
aaaatcattgcagtagatttggccaagcgtccagaaaattcagaagtaactcattatatt
tcatattgtccagaatgccagactgaattggtacgaaatgttggtgaagccaatcattat
tgtcctaatttctacggttgtccaccgcagattataggcagagttcaacatttcatttct
agaaaagctatggatattgaaggtcttggcggagaaactgttgcacttctttttaaaaat
gatttagtgcacaattacgcagatttgtacgaattgaaagtagaagatattctgcattta
gaaagaatggctcaaaaatcagctgaaaatctggtaaatggagttcagaaatcaaaagaa
attccgttcgaaagtgtattatttgcactaggaattcgttttgttggagaaactgtggcc
aaaaaattagccaagcattataaaaatattgacgctttaagccgagcttcgttaatggat
ttaattttagttgatgaaattggagaaagaattgccagaagcgttgttgaattttttgaa
aatgaagaaaatcaaaaaattattgagcgcttaaaaaattacggagttcaatttcaaatt
gaagaaagagtaaatccaaacgcgacagaaaaatttgttggaaaaacctttgtggtttct
ggcgtatttagtcagttttcaagagatgaattgaaaaaagccattgaagataatggtgga
aaagtgggaagctcaatttctgcaaagacagattttgttgtagcaggagataatatggga
ccggcgaaattagaaaaagcaactaaattaaatatcactatattatcagaagaagatttt
attaacaaattaaatgacagcgaataa

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