Fulmarus glacialis (Northern fulmar): 104080356
Help
Entry
104080356 CDS
T08370
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
fga
Fulmarus glacialis (Northern fulmar)
Brite
KEGG Orthology (KO) [BR:
fga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fga03036
]
104080356 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
fga03400
]
104080356 (SMCHD1)
Chromosome and associated proteins [BR:
fga03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104080356 (SMCHD1)
DNA repair and recombination proteins [BR:
fga03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104080356 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104080356
NCBI-ProteinID:
XP_009581020
LinkDB
All DBs
Position
Unknown
AA seq
1957 aa
AA seq
DB search
MEKTEMLNNVFASVFTGNCSSHISRVPESHDRDWRNEVPLFTGEDQVEDHLRNLDVQVPF
ALAELIDNSLSATSRITGIRSIQIKLLFDDSQGKPAVAVIDNGRGMTSKQLNNWAVYRLS
KFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVH
ELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDDERFLHNLILEERDKESFTAVV
ITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNETNAVTRDVSPFNNIDIQISMFE
KGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPDD
PCFPSKLNDDDDDDDDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLA
PVECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFAL
WLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWATYAAIEWDGKTYKTGQLVKTVKT
LPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEMKTIPISKLDRTVSDKAVKK
YIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIVILNKKGEAMQKLPGTSHGG
SKKLLVELKVILHSPSGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESN
ADTYAGRPLPSKIFKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTD
VKPILEASGLTLQYEEITAGTKCIIKGVTAKGCINSCQGKNFNLKVTLPGLKEDTQIFKI
RLQPGPPRQLKVKPDSEVLKIENGTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNLPV
YSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEILSCKDVPPVEKIIKLLPSSHVARLQ
ILSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEGEREIHITPAVAEKIKVNWTPRIN
KEQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFTVRPLADEPRHIKCKLKGPNT
LQMGEELQSEIDVMITDQYGNQVQTVTSACVNSLGVSGPGLDKSNLKITWQESTLTMRVK
GIRFKSCLLGSKELCFAWREFSDFLRVNVTAGSPAKLQFVDWPELEKPVAVINGRELQKP
LIVQLCDQWGNPSPEPNVKINLTKSNNLRIVPSNQQHKTDENGRANLGVISIHAPRGEHT
LQLKATYNKTTLDCPIITLNVLPDPEKPVRLNVKYDKNASFPAGGTFPDFMVSVLSEDDN
IIKNINPARICMKMWEAHSSGTRISTEITTFSCSKVKDDKEDGFFYFRDKVVPERVGTYS
IQFTFAMDKTNILSSDQIIVEVVPNDPVRLLPDSLPATPAVSNVRTVTSRTLVKDLYLHV
MDEYNNHTGIDLVGRIIAKIMSPNEDDTEIPQFQGKVSTIEFPFDRGSAEINLVLAENSP
GRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQMATLTRERDQLSQSIGVYRN
WFDTTNQLVTELKCQVKEAETRETQLKNELKKHQIELPQTNTLQYVDSLIKQKMLDQEGV
MKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARS
IFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKIFFRPIGNPVFARDLLTFPDNVEH
CQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPP
MDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVVKLDNVNKDLDLHLQSLNTPEVQKKK
QELAEQEKSLKIIEQKLGMTPSDKVTESLLQPIMLDMSDTPIPPKRMRRETVKKLYSSEE
WISSPTKKQQQQQQQQQQQPLQISPSELNGTPRKRKA
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggagaagactgaaatgctaaacaatgtttttgcgtcagttttcactggtaattgttct
tcccacatctctcgagtccctgaatctcacgacagggactggaggaatgaagtcccactc
ttcacaggagaagatcaggttgaagaccatctgagaaacctggatgtacaagtcccattt
gcccttgctgaattgattgacaactctctatcagctacatcccgaattactggtattcgg
agcatacagataaaattgttatttgatgactcccaaggaaaaccagctgttgctgtgatt
gataatggaagaggaatgacttctaaacagcttaacaactgggctgtatatagactgtca
aagtttacaagacaaggtgacttcgagagcgatcattcaggatatgtacgccctttgcca
gtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaaacaagcagtg
ttcttcgttggacagtctgccagaatgataagcaaacctgcagattctcaggatgttcat
gaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaatatat
agtggatacattcgaaacaggaagccatctgactctactcacatcacaagtgatgatgaa
agatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagttgtc
attacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttggaca
aggcagctggcacatatctatcactattatatccatggaccgaaaggaaatgaaactaat
gctgtaacaagagacgtaagccctttcaacaacatcgacattcagatttcaatgtttgaa
aaaggaaaagtaccaaagattgtcaatcttagggagatcaaagatgacatgcagacattg
tatataaatactgcagcagatagttttgagtttaaggcacatgttgaaggagaaggtata
gtggaaggcatcatccgatatcatcccttcttgtatgataaagaaacataccctgatgat
ccgtgttttccatcaaaattaaacgacgatgatgatgatgatgatgactgctttatagta
gaaaagggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaata
ccatacacaactgtagaagattttgactggtgcgctcctccaaagaagagaggattggca
ccagtggaatgctacaacagaatttctggtgcattatttaccaatgataagttccaggtc
agcacaaacaaactcactttcatggatctggagctgaagctaaaagataagaacactctg
ttcacgagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttg
tggcttaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaagga
ataactacacgtactgatttaccatccaaaagaatgcagagcccttgggcaacatatgct
gcaatagagtgggatgggaaaacgtacaaaactggacagctggtgaaaactgttaagact
cttccaatattctatggaagtattgagaaattttttttgtatggagaccatgatggggat
atatttgccactggaggagaggttcaaattgctttggaacctcaggcattgtatgctgaa
atgaagactattccaatctcaaaacttgacagaacagtgtctgacaaagctgttaaaaaa
tacatagaggatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaagga
gatgaattattaccaaatgaaacaagatttgctggcacaccaataggagcactaagaata
gtaattttgaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggt
tcaaagaaacttcttgttgaactcaaggttattttacattcacctagtgggaataaagaa
ataatttcccatatcagtcagcatggaggcaaatggccgtactggtttaaaaaaatggaa
aatcttcagaaacttgggaactacaccttgaaactgcaagtagtgttgaatgaaagtaat
gcagacacttacgcaggaaggcctctaccgtctaaaatatttaaatttactattatagag
ggtaaaccagagaaattttcagtgggtcttttggagcttccttttcgagttggagtacct
tttaatattcctttggaattgcaggatgaatttggtcatgcaacacagttgacaactgac
gttaaaccaattcttgaagctagtggattgacactgcagtatgaagaaataactgcagga
acaaagtgcatcatcaagggtgtcactgctaaaggctgtataaatagttgccagggcaag
aactttaatctgaaggttactcttcctggtttgaaagaagacacacaaatcttcaaaata
agattgcagcctggccctcctcgtcaattgaaagtaaaaccagattctgaagttctaaag
attgaaaatggtacagctttcccctttcaggttgaagtactggatgaatcaggaaatata
acagcacagccgaagttgatagttcattgtaagtttttaggtgcttcaaaccttcctgtg
tattctgtggactgcagtaatgcaggaacaaacattttaactggtccagttatacatgta
cagaatatcaagaaagaccagatgctgaaagcaaggattgaaatacttagttgtaaagat
gtgccaccagtggaaaagattattaaacttcttcctagcagtcatgttgcaagactacag
atcttaagtatggatggacaaaaagctattcaaattaaacatcaggatgaaattaattgg
gttgctggcgatgtcatgcacaaccttatatttcagatgtatgatgaaggagaaagggag
atacacataactccagctgtggcagaaaaaatcaaggttaactggacacctagaattaac
aaagaacagttgattcagggattattacctgatgtaaaagtaccaacatcagtaaaagat
gtacgttactgtctaattacttatcttgatgaccatgtgtctttggagagtgcgttcaca
gtcagaccgcttgctgatgaacccagacacattaaatgtaaattaaaaggaccaaacaca
ctgcagatgggtgaagaactacaaagtgaaattgatgtaatgattacagatcagtatgga
aatcaagttcagacagtgacatctgcgtgtgtaaattccctaggagtttctgggcctgga
cttgataaatcaaatttgaaaataacttggcaggaaagtactctaacaatgagagtaaaa
ggtattcggtttaaatcttgtttacttggaagcaaagaattgtgcttcgcttggcgtgaa
ttttctgactttctcagagtaaatgtaactgcaggatcccctgctaaattgcagtttgtg
gattggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcagaagccc
cttattgttcagctgtgtgatcagtggggaaatccatctcctgaacctaatgtcaaaatc
aaccttacaaagagtaacaacttaaggattgttccttcaaaccagcaacataaaacagat
gaaaatggtagggctaacctgggagttattagtattcatgcacctaggggagagcacact
ttacagcttaaagccacatacaacaagaccacattagattgtcctataatcacattaaat
gtcctgcctgatcctgagaaacctgtccgcttgaatgttaaatatgacaaaaatgcttct
tttccagcaggaggtaccttccctgattttatggttagtgttctttctgaagatgacaac
attattaaaaatattaatccagcacggatttgtatgaaaatgtgggaagcacacagcagc
ggaactaggatatcaactgaaattacaacatttagctgtagtaaagtgaaggatgataag
gaagatggcttcttttacttcagggataaagtggttccagagagagtgggcacttacagt
atccagtttacctttgcaatggataagacaaatatactcagcagtgaccagattatagtt
gaagttgtacctaatgatcctgtacgcttgttacctgattctttaccagctactccagca
gtttccaatgttcgaactgttactagccgtacactggtcaaggatttatacctccatgta
atggatgaatataacaaccacactggaattgatctagttggcagaataatagcaaaaatt
atgagccccaatgaagatgatacagagatcccacagtttcaggggaaagtcagtacaatt
gagtttccatttgacagaggatcagctgaaattaatctagtgctggctgaaaacagtcct
ggaagagatagcactgaatatattcttgtatttgagccagatctgccagctttgaaaaaa
cctttggaaccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaacag
atggcaacacttacaagggagagagaccaattatctcagtccataggtgtttacagaaat
tggtttgatactactaatcagcttgtaactgaattgaaatgtcaggttaaagaagctgaa
acaagagaaactcaactgaagaatgaactgaaaaaacaccaaattgaattaccacagaca
aacacacttcagtatgtggattctcttataaaacaaaagatgttggatcaagaaggagta
atgaaacagccaagacgaacttgtacgctcccaaactatccaaaaggcaaccaggatatt
ttaggcaagattgcacatttagcacaaattgaagataatgaagcagcaaaagttatctct
tggcatttggccagcgacatggactgtgtagtcacactgactactgaagccgctcgttct
atttttgatgaaactcaaggtcgacagcaagtgttaccccttgattctatttacaagaag
acactccctgattggaacaggcctttacctcacttaagaaatggaaaaatcttcttcaga
cctattggaaatcctgtatttgccagagatctgttaacatttccagataatgtagagcat
tgtcaaacagtgtttgggatgctcttgggtgacactatcattatagataacttggatgct
gccaatcattacagaaaagaggttgtaaaaattacacattgccctactttgctgactagg
gaaggagacaggattcgcagcaatggaaaatttggaggccttcagaataaagctcctcca
atggacaaactcagaggaatggtatttggagcacccatgccaaaactttactctactttc
tctggacagatagatcttcttcagcaataccgtgcagcagtggtgaaacttgataatgtg
aataaggaccttgatttacatttgcagtcacttaacactccagaagtgcaaaagaaaaaa
caggaacttgccgaacaagagaaaagtctcaagataatagaacaaaaattgggtatgact
ccatcagataaagtcactgaatcattacttcagcctataatgttagatatgtctgacacc
cccatccctcccaaaagaatgcgaagagaaacagtaaaaaaattgtatagctcagaagaa
tggatctcctctcccacaaagaagcagcagcaacagcagcagcaacagcaacagcaacca
ctgcaaatatccccttcagaacttaatggaactccacgaaagagaaaggcatag
DBGET
integrated database retrieval system
