Flavobacterium gilvum: EM308_14995
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Entry
EM308_14995 CDS
T04609
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fgl
Flavobacterium gilvum
Pathway
fgl03030
DNA replication
fgl03410
Base excision repair
fgl03420
Nucleotide excision repair
fgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EM308_14995
03410 Base excision repair
EM308_14995
03420 Nucleotide excision repair
EM308_14995
03430 Mismatch repair
EM308_14995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fgl03032
]
EM308_14995
03400 DNA repair and recombination proteins [BR:
fgl03400
]
EM308_14995
Enzymes [BR:
fgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EM308_14995
DNA replication proteins [BR:
fgl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EM308_14995
DNA repair and recombination proteins [BR:
fgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EM308_14995
NER (nucleotide excision repair)
GGR (global genome repair) factors
EM308_14995
MMR (mismatch excision repair)
DNA ligase
EM308_14995
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EM308_14995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
BRCT_2
PTCB-BRCT
EcoRI
HVO_2753_ZBP
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AOW10695
UniProt:
A0AAC9I6P3
LinkDB
All DBs
Position
complement(3704697..3706703)
Genome browser
AA seq
668 aa
AA seq
DB search
MDILQTIQTLREELNLHNYNYYVLDKSTLSDYEFDMKLKELQDLENKHPEFFDSNSPTQR
VGGSITKNFETIVHEYRMYSLDNSYSKEDLIDWENRIQKVLGNVSLEYSCELKYDGASIS
ITYENGKLKKAVTRGDGFQGDDVTNNIRTIKSVPLELKGEGFPPKFDIRGEIILPIAGFE
KMNQELIEIGETPYSNPRNTASGSLKLQDSTEVAKRPLDCLLYFLTGPNLPFNSQFEGLE
KARYWGFKAPVEAKLANNLDEVFQFIEYWDVHRHDLPYETDGVVIKVNDFRHQEELGYTA
KSPRWAIAYKFKSEQAITRLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQI
EKLDIRIHDTVFVEKGGEIIPKIIEVDLSKRPENSVPTQYVTHCPECNTELIRGEGEANH
YCPNYYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFNNGLVHNYADLYELTVEQILP
LERMAQKSAENLVKGVENSKNIPFESVLFALGIRFVGETVAKKLAKHYKNIDALQQATLM
DLILVDEIGERIAQSVIDFFENEENKVIIERLKSYGVQFEIVEKINPNATEKFLGKTFVV
SGVFSTFSRDELKKAIEDNGGKVGSSISAKTDFVVAGENMGPAKLEKANKLNVVIISEDQ
FITMLNEA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatatacttcaaaccattcaaacgcttagggaagaacttaatcttcacaattataat
tattacgtgttggataaatcaacattgtctgattatgagtttgatatgaaattaaaggaa
cttcaggatttagaaaataaacatccggaattttttgattccaattcgcctacgcagagg
gttggaggaagcataaccaaaaattttgaaacgatagttcatgaatatcgcatgtattct
ttggataattcctattctaaagaggatttgattgattgggaaaacagaatccaaaaagtt
ttagggaatgtttcattggaatattcttgtgaattaaaatacgacggagcctctataagt
attacctatgaaaacggaaaattaaaaaaggcggtgactcgtggggatggttttcaaggt
gatgatgtgaccaataatattcgaacaataaaatcggttcctttagaattaaaaggagaa
ggttttcctccaaaatttgatattcgtggtgaaattattttgcctatcgctggttttgaa
aaaatgaatcaggaattgattgaaattggcgaaacaccatattctaatcctagaaacact
gcttccgggagtttaaaattgcaagatagcactgaagtagccaagagaccattggattgc
ttgttgtattttttgacgggaccaaatttgccttttaattctcaatttgaaggtcttgaa
aaggccagatactggggtttcaaagctccggttgaagcaaaattggccaacaatcttgac
gaagtttttcaatttattgagtattgggatgttcatcgtcatgatttgccgtatgaaact
gacggtgttgtgataaaagtaaatgattttcgtcatcaggaagagttgggttatactgca
aaatctccaagatgggcaatcgcctataaattcaagtcggaacaggctattacacgtctg
aattctatttcgtaccaagtaggaagaacaggggcgattacgccggtcgcgaatctagag
ccggtgcaattggcaggaactattgtgaaaagagcttctttgcacaacgctgatcaaatt
gaaaagttggatattcgaattcatgatactgtttttgtagaaaaaggaggagagattatt
cctaaaattatcgaggttgatttaagtaagcgacccgaaaattcagtgcctacgcagtat
gtaacgcattgtccggaatgtaataccgagttgattagaggcgaaggcgaagccaatcat
tattgccctaattattatggttgtcctccgcagattataggaagaattcaacattatatt
tcgagaaaagcaatggatattgaagggcttggcggagaaacggttgccttgctttttaat
aatggtttagttcataattatgccgatttgtatgaattgacagttgaacaaattttacct
ttggaacgaatggctcaaaaatcggccgaaaatctggtaaaaggggttgaaaattcaaaa
aacatcccttttgaaagcgtattgtttgctttaggaatccgatttgttggggaaactgta
gccaaaaagttggctaaacattataaaaatattgacgcattgcagcaggcaactcttatg
gatttgattttggttgatgaaatcggggaaagaattgctcaaagtgttattgattttttt
gaaaatgaagaaaataaagtcattatcgaaagactgaaaagttacggtgtacaatttgaa
attgttgaaaaaataaatcccaatgcaactgagaaatttttagggaaaacatttgttgtt
tctggagttttttcaacattttcaagagacgaattaaaaaaagccatcgaagataacggc
ggaaaagtggggagttcgatatcggccaagactgattttgtggtggctggtgaaaatatg
ggacctgccaaacttgaaaaagcaaataaacttaatgtagtaataatttcagaagatcaa
tttataacaatgttgaatgaagcctag
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integrated database retrieval system
