Allofrancisella guangzhouensis: SD28_03105
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Entry
SD28_03105 CDS
T03527
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fgu
Allofrancisella guangzhouensis
Pathway
fgu03030
DNA replication
fgu03410
Base excision repair
fgu03420
Nucleotide excision repair
fgu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SD28_03105 (ligA)
03410 Base excision repair
SD28_03105 (ligA)
03420 Nucleotide excision repair
SD28_03105 (ligA)
03430 Mismatch repair
SD28_03105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fgu03032
]
SD28_03105 (ligA)
03400 DNA repair and recombination proteins [BR:
fgu03400
]
SD28_03105 (ligA)
Enzymes [BR:
fgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SD28_03105 (ligA)
DNA replication proteins [BR:
fgu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SD28_03105 (ligA)
DNA repair and recombination proteins [BR:
fgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SD28_03105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SD28_03105 (ligA)
MMR (mismatch excision repair)
DNA ligase
SD28_03105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SD28_03105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
AJC48700
UniProt:
A0A0A8E3A1
LinkDB
All DBs
Position
657489..659531
Genome browser
AA seq
680 aa
AA seq
DB search
MTPSTFFYIDYNNLAFAELKSAIDKLADYLSQQSYLYHTLDKPIITDSDYDKLYQLLQNL
VTKHPELTPVNSVLDRVGGKVLEGFETVKHKKKMLSLANVFSLTELKNFYEKLEYPDLEI
ECEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLQLNTNNPPKELEV
RGEIILDKASFLALNNYMQEQGQKTFANPRNAAAGSIRMLDSKIVAKRPLKLYCYGIGYY
SKDFEHHQTQFQLMNYLKSLGFTISNHMSLAADFNDIEKYYQQMSHHRADLDYDIDGLVF
KVNDIKLQDAIGYVSRAPKWAVAYKFPAEEVESEVINIEFQVGRTGAITPVARLKPVAVG
GVIVSNATLHNIHEIKRKDIHVGDRVIVRRAGDVIPEVVRSLPEYRKMSAKLIEIPSNCP
ICNSTIENTNDQVIYRCTGGWHCQAQTAERLKHFVSRKAMDIDKVGAKLIEQLVRDNLIK
YPADIYKLTFEKLANLERMGVKSSQNVLHSIANSKKPSLARFIFSIGIKDIGEVSSEALA
NYFASLEKFRQARFDELISINDIGEIMANNVISFWQDSLNIKIVEDLLNVGIEISNPKRL
QKITNSNFDNKTVVITGTFENYSRIELSQLLKSMGAKVTSSVSKKTDMVISGENAGSKFT
KAQELGVDIVTENKLKGLLN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacaccaagtacatttttttatatagattataataatctagcatttgctgagttaaaa
tcagctatagataagcttgctgattatcttagtcaacaaagttatttgtatcacacatta
gataagccaataataacagatagtgattacgataaactttaccagcttttgcaaaactta
gttactaaacaccctgaattaactccagtaaattcggttttagacagggtaggaggaaaa
gttttagaaggttttgaaaccgttaagcataagaaaaaaatgctttctttagctaatgtg
tttagcttaacagaactaaaaaacttttatgaaaaattagagtatcctgatctcgaaata
gagtgcgaaccaaaaatggatgggttagcaataagtattttttataagaatggtaaattt
gattatgctgtaactagaggtgatggaatccagggcgaaaaagtttcagaaaacgttaaa
actattcgtaatgtgcctttgcaattaaatactaataatccgcctaaggaattagaagta
agaggagaaattattttagataaagctagttttttagcgcttaataactacatgcaggaa
caaggtcagaaaacctttgcaaatcctcgtaatgcagctgctggaagtatacggatgcta
gattctaaaatcgtagctaaacgcccattgaaactatattgctatgggataggatattat
tctaaagattttgaacatcatcaaactcaatttcagcttatgaattatcttaaaagctta
ggcttcacaataagtaatcatatgagtttagctgctgactttaatgatattgaaaagtat
tatcagcaaatgagccaccatagagcagatttagactatgacatagacggtttagttttt
aaagttaatgatattaaactccaagacgctattggttatgtttcaagagctccaaagtgg
gctgtggcttataagttccctgcagaagaggtagagtcagaagttataaatattgaattt
caagtaggtagaaccggcgctattactcctgtagctagacttaaacctgttgcagttggc
ggggttatagtttctaatgctactttacataatattcacgagatcaaacgaaaagatatt
catgtaggagatagagtaattgtacgcagagctggagacgtaataccagaggttgttaga
agtttaccagaatatcgtaaaatgtcagctaagcttatagagataccaagtaattgccca
atttgtaattcaactattgaaaatactaatgatcaagtaatatatcgttgtacagggggt
tggcattgtcaggcgcaaactgctgaacgtttaaaacattttgtttctcgtaaggctatg
gacattgataaagttggagctaagcttattgaacaactggttagggataatttaattaaa
tatccagcagatatctataagcttacttttgagaagttagctaaccttgagagaatggga
gtaaagtcatcgcagaatgttttacactcaattgctaatagtaaaaaacctagtttagct
agatttatcttttctattgggattaaagacattggagaagtttcgtcagaagcgctagca
aattattttgctagtttagagaagtttcgtcaagctaggtttgatgagctaatatctata
aacgatattggtgaaattatggctaataatgtaatttctttctggcaagattctttgaat
atcaaaatagtcgaagacttactaaacgttggtatagaaatatctaacccaaaaaggtta
cagaagattacaaatagtaattttgacaataaaactgtagttatcactggcacgtttgaa
aattatagtcgtatagaattatctcagctactaaaatctatgggggctaaagttacatct
agtgtatctaaaaaaacagatatggttatctctggtgagaatgcaggtagtaagtttacc
aaggcccaagagttgggtgtggatatagtcacagaaaataagttaaaaggtttattaaat
tga
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