Francisella hispaniensis FSC454: FSC454_03150
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Entry
FSC454_03150 CDS
T04700
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fhi
Francisella hispaniensis FSC454
Pathway
fhi03030
DNA replication
fhi03410
Base excision repair
fhi03420
Nucleotide excision repair
fhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSC454_03150 (ligA)
03410 Base excision repair
FSC454_03150 (ligA)
03420 Nucleotide excision repair
FSC454_03150 (ligA)
03430 Mismatch repair
FSC454_03150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fhi03032
]
FSC454_03150 (ligA)
03400 DNA repair and recombination proteins [BR:
fhi03400
]
FSC454_03150 (ligA)
Enzymes [BR:
fhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSC454_03150 (ligA)
DNA replication proteins [BR:
fhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSC454_03150 (ligA)
DNA repair and recombination proteins [BR:
fhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSC454_03150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSC454_03150 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSC454_03150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSC454_03150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
APD50204
UniProt:
A0AAC9NPH1
LinkDB
All DBs
Position
644083..646119
Genome browser
AA seq
678 aa
AA seq
DB search
MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL
VDDNPQFKPTNSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTINPPEEIEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLFSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKSFSEVEEYHRKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAVAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VMVSNATLHNINEIKRKDIRVSDRVIVRRAGDVIPEVVKSLPQYRKPDAHMVEMPTNCPV
CDSAIENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMAAKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDPLNIQIVDKLLSNAINIQNPEKIE
QAHNESFTNKTVVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLTK
AQDLGVTVILEQDLQNLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacgccaaatgaatttttttctataaaatatcatattttagctaaagcagaattaaaa
gcttacatagacaaattagctgattatcttagtcaacagagctatttatatcatacctta
gataaaccaattatttctgattctgattatgataaattgtttagattacttcaagattta
gttgatgacaatccccaatttaagccgacaaattcagtattagatcgtgttggcggagaa
gttttagcaggatttgaaactatcaagcataaaaagaaaatgacatctttagcaaatgtt
tttagtctagaagagctgcgtgatttttatgacaaaatagagtatgacattgagcttgag
tgtgagcctaaaatggatggtcttgctattagcattttttacaaaaatggtaaatttgac
tatgctgttacgcgtggtgatggtattcaaggtgaaaaagtctcagaaaatgtcaaaact
atccgtaatgtcccacttaaactaaatactataaatcctccagaagaaatagaagttcgt
ggtgagattatcttagataaacaaagttttttatctcttaatgagtatatgcaaactcat
gagaacaaaacttttgcaaacccgcgtaatgccgcagctggaagtatccgtatgcttgac
tcaaaagttgtagcgaagcgaccacttaaactttttagctatggtattggctacttttcc
aaagactttgtacatcctgaaacacaatttgagcttatgaatctattacaaagttttggc
tttacaattagtgataatatgtttttggcaaaaagtttctcagaggttgaggaatatcat
cgcaaaatgagtcaccagcgtgctgatttggcttatgatattgatggcttagtttttaag
gttaataatattaaactacaagatactattggatacactgctagaggacctaagtgggct
gtagcatataagttcccagctgaagaagttgaatcagaagtgttaaatgtagagtttcaa
gttggcagaacaggagcaattacaccagttgcaaggcttaagccagtagcagtaggtggg
gtgatggtttcaaatgcaaccttacataatatcaatgaaattaaacgcaaagatattcga
gttagcgatagagtaatcgtacgtagagcaggggatgtaattccagaagtggtcaaaagc
ttaccacaatatcgtaagcctgatgcacatatggttgagatgccaacaaattgtccagtc
tgtgattcagcaattgagaatgttaacgatcaggctatatatcgttgtacagggggatgg
cattgtcaggctcaaactactgagcgcttgaagcacttcgtctcacgtaaagcaatggat
attgataagcttggagctaaactaattgaacaacttgttgctgcagatttaatcaagtat
cctgctgatatttacaaactcaattttgagcaattgacaggcttagaaagaatggctgct
aaatcatcacagaatgttttagactctatcacaaaaagtaaagagccaagtttagcaaga
tttatttttgcaataggtattaaagatgttggtgaggtatcgtcagaagctttagccaat
cattttggtagcttagaaagtttccgtgaagccaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattctggcaagacccattaaatata
caaattgttgataagctattaagtaatgctattaacatccaaaatccagaaaaaattgag
caagcgcataatgagagttttacaaataaaacagttgttattacagggacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggcgcaaaagttacttcaagt
gtctctaaaaaaactgatatggttatttgtggcgataatgctggcagcaaacttacaaaa
gctcaagatttaggagttacggttatattagaacaagatttacagaatttactatga
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