Fructilactobacillus hinvesii: M3M39_03215
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Entry
M3M39_03215 CDS
T08844
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fhin
Fructilactobacillus hinvesii
Pathway
fhin03030
DNA replication
fhin03410
Base excision repair
fhin03420
Nucleotide excision repair
fhin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fhin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M3M39_03215 (ligA)
03410 Base excision repair
M3M39_03215 (ligA)
03420 Nucleotide excision repair
M3M39_03215 (ligA)
03430 Mismatch repair
M3M39_03215 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fhin03032
]
M3M39_03215 (ligA)
03400 DNA repair and recombination proteins [BR:
fhin03400
]
M3M39_03215 (ligA)
Enzymes [BR:
fhin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M3M39_03215 (ligA)
DNA replication proteins [BR:
fhin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M3M39_03215 (ligA)
DNA repair and recombination proteins [BR:
fhin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M3M39_03215 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M3M39_03215 (ligA)
MMR (mismatch excision repair)
DNA ligase
M3M39_03215 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M3M39_03215 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
5_3_exonuc
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
USS88499
LinkDB
All DBs
Position
663191..665218
Genome browser
AA seq
675 aa
AA seq
DB search
MQELDLKQLTEAEAAQRAAALRPQLLQWGKEYYENDQPSVPDAEYDQAYNQLVQLETAFP
AIVTPDSPTQRVGGQVDSEFTKVPHPIPMLSLGDVFSADELNEFVVRLQKDYPAVQEFNC
ELKIDGLSISLRYEQGRLVQGSTRGNGLIGEDITANVKTIASIPQRLSRPIDIEVRGECY
MGKDAFLKLNERRELEGKSTFANPRNAAAGSLRQLDPKVTAARHLSTFMYNVADYDDLET
TTQSGLLAELKELGFSVDPDYQVAHTLDEINAYIEKYQAQRDQLSYGIDGIVIKTNSLAL
QTEIGHTVKVPKWAIAYKFPPEEAHVKIDAIEWTIGRTGVVTPTAVFAPVKLAGTTVSRA
TLHNPDYIEKKDIRIGDTVVVYKAGDIIPEVEHYLPQERPADAQPYVIPTTCPSCGAELV
HLDDEVALRCINPQCPAQLAEQVTHFASRNAMDIEGLGPKIVQQLFAKHLIKDVASLYHL
QFDDLVTLDKFGEKSAQNLLQAIDQSRANSLERLLFGLGIRHVGGKAALLLAQHFGSLDQ
LRAATAEEIEAIDSIGGTIADSLVTYFAEPNSQELLQELADAGVNFEYRGQAPVTQSDSF
FFGKKVVLTGKLQEMTRGEAQAFIEAQGGTVTSSVSKKTDLVIAGEAAGSKLTKAQSLGV
PVWDEQRFSAAMAEQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggaacttgatttaaagcagctaactgaagccgaagcagcgcaacgggcggcagca
ttgcgcccccagttgttgcagtggggcaaagaatactacgaaaatgaccagccgtcggtg
cccgatgcggagtatgaccaggcctacaaccagttggtgcaactcgaaacggcttttccg
gcaattgtgacgccggattcgcctacacaacgagtcgggggacaggtcgacagtgaattt
accaaggttccgcacccgattccgatgctgtctttaggggacgtcttttctgcggatgaa
ctaaacgaattcgtggtacgcctgcaaaaggattatccggcggtccaggaatttaactgt
gagctcaaaattgacggtctttccatctcactgcggtacgaacagggccggttggtccag
ggatcgacgcggggaaacggattgattggagaagacatcacggcgaacgtcaaaacgatt
gcctcgattccgcaacgactgagtcggccgattgacattgaggttcggggcgagtgttac
atgggcaaagatgccttcttgaaactcaacgagcgccgcgaactcgagggcaagtccact
tttgccaatccacggaacgccgcggcgggcagtctgcggcagttagatccgaaggtcacc
gctgctcggcacctgagtaccttcatgtacaacgtcgcggactacgatgatttagagacc
accactcagagcggattgctggcggaactcaaagagcttggctttagcgttgatccagac
tatcaggttgcccacacgctagacgaaatcaatgcttacattgaaaagtaccaggcgcag
cgggatcagttgagttatgggattgatggtattgtaattaagaccaactcgctggcgttg
caaacggaaattggtcacaccgtgaaggtgcccaagtgggcgattgcctacaagtttcct
ccagaagaagctcacgtcaaaatcgatgcaatcgaatggacgattgggcggaccggggtg
gtgactcctacggcggtctttgccccggtgaagttagccggaaccacggtgtcccgggcc
acgctccacaatcctgattacatcgaaaagaaagacattcggattggtgataccgtggtc
gtttataaggctggagacatcattcccgaggtggaacactatctgcctcaagaacggccg
gcggatgcacaaccgtacgtgattccgactacttgtccttcgtgtggagctgaactagtt
cacctagatgatgaagtggcgttgcggtgcattaatccccagtgtcccgctcaactagcc
gaacaggtgacccactttgcctcgcgcaacgcgatggacatcgaaggcctcggtcctaaa
attgtgcaacagctctttgctaagcacttgattaaggacgtggctagcttgtatcacctg
caatttgacgatttggttacgcttgacaagtttggagaaaaatccgctcagaacttgtta
caggccattgatcagagtcgagcgaactcgttagaacgtttgctgtttggactggggatt
cggcatgtcggtggcaaggcggctttattgctagcccagcactttggttcgttagaccag
ctccgagcggcgaccgctgaagaaattgaagcaattgactccatcggaggcacgattgct
gacagtttggtgacctactttgctgaacctaacagtcaagaactcctgcaggaattagcg
gatgccggcgtgaactttgaatatcgaggtcaggcgccggtcacccagagtgacagcttc
ttctttggtaagaaagtagtgctcaccggcaagctgcaggagatgacgcggggagaagcc
caggccttcattgaagcgcaggggggcaccgttaccagcagcgtctcgaaaaaaacagac
ttagtcattgccggagaagcagccggcagtaagttaaccaaagcgcagtcgttaggagta
cccgtctgggacgaacaacgatttagcgccgccatggctgaacaataa
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integrated database retrieval system
