Fervidibacillus halotolerans: OE105_00170
Help
Entry
OE105_00170 CDS
T08855
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fhl
Fervidibacillus halotolerans
Pathway
fhl03030
DNA replication
fhl03410
Base excision repair
fhl03420
Nucleotide excision repair
fhl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OE105_00170 (ligA)
03410 Base excision repair
OE105_00170 (ligA)
03420 Nucleotide excision repair
OE105_00170 (ligA)
03430 Mismatch repair
OE105_00170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fhl03032
]
OE105_00170 (ligA)
03400 DNA repair and recombination proteins [BR:
fhl03400
]
OE105_00170 (ligA)
Enzymes [BR:
fhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OE105_00170 (ligA)
DNA replication proteins [BR:
fhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OE105_00170 (ligA)
DNA repair and recombination proteins [BR:
fhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OE105_00170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OE105_00170 (ligA)
MMR (mismatch excision repair)
DNA ligase
OE105_00170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OE105_00170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Mut7-C
5_3_exonuc
zf-IS66
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WAA12605
UniProt:
A0A9E8M0C8
LinkDB
All DBs
Position
42340..44358
Genome browser
AA seq
672 aa
AA seq
DB search
MNFHEAEKRVKELHRLLNQYGYEYYVLDQPTVPDAEYDRLMQELISLEEKFPELKTPYSP
TQRVGGDVLEGFSKVEHSIPMLSLANAFNEGDLRDFDRRVRQTIGEDLSYVCELKIDGLA
VSLKYETGIFVQGSTRGDGFVGEDITANLRTVKSIPLQLKEEVTIEVRGEVFMPKKSFVA
LNKQREEMGADLFANPRNAAAGSLRQLDPKIAAERNLDIFLYAIGEHEGKTIKTHSEGLD
YLDSLGLKTNKERRLCQSIDEVLDYITQWQEKRPELPYEIDGIVIKVNRYDQQTRLGSTA
KSPRWAIAYKFPPEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRASLHNEDLI
REKDIRIGDAVVVKKAGDIIPEVVKPIIERRTGEEKVFSMPKQCPECGSELVRLDEEVAL
RCMNPKCPAQIREGLIHFVSRNAMNIEGLGERVITQLFSEKLIRDVADIYNLKREQLIQL
ERMGEKSVSNLLFSIEASKNNSLERLLFGLGIRHVGSKAAKILAEKYGHIDRLMEATEEE
LQSIHEVGEKMANSVVTYFQMPQVKELIKKLRASGVNLEYKGPKKDEGKIIESVLTGKTV
VLTGKLEQLTRNEAKEQLELMGAKVTGSVSKKTDIVIAGFDAGSKLTKAQDLGIEIWDEK
RLLMELNRRESE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaattttcatgaggcggaaaaacgtgtcaaggaattacatcgtttgttgaaccaatac
ggttatgaatattatgtgttggatcagcctaccgtgcctgatgcggaatatgaccgacta
atgcaggaacttatctcccttgaagagaaatttcccgaactcaaaactccatactcccca
acccaacgagtcggaggggacgtactggaaggattttcgaaagtagaacattcgatcccg
atgttaagtctggcgaatgcatttaatgaaggggatctacgagattttgatcgacgggtt
cgacaaacgatcggtgaagacctgtcctacgtttgtgagttgaaaatcgatggattggcc
gtttcattgaaatatgaaaccgggatattcgttcaaggatccacccggggagatggtttt
gtcggggaagatattactgctaatttacggacggtcaaatcgattcctttacaattaaaa
gaggaagtaaccatcgaggttcgtggagaagtatttatgccaaaaaaatcgttcgtagct
ttaaataaacaacgggaggagatgggtgccgatttatttgccaatcctcgaaatgccgct
gcaggctccttacgtcaactggatccgaaaattgcagccgaaagaaacttagatattttt
ttatacgccatcggagagcatgaagggaagacgataaaaacccatagtgaaggtttggat
tatctcgattctttaggattaaaaacgaacaaagaacgccgattatgtcaaagtatcgat
gaagtactagattatattactcaatggcaagaaaagcggccggaattaccttacgaaatt
gacggtatcgttattaaagtgaatcgctatgatcagcaaactcgtttaggttcgacagcg
aaaagtccccgttgggcaattgcatataaattcccccctgaagaagttgtaacgaagctg
atcgatattgaattaaatgtcggtcggacgggtgttgtaacccctaccgctattttggaa
ccggttcgggtagccggaacgacggttcaacgggcttcattgcataatgaagatttaatc
cgggaaaaagacattcgaatcggggatgcagtcgttgtaaaaaaagctggggatattatt
ccagaagttgtgaagccaattatcgaaagaagaactggggaagaaaaggtattttccatg
ccgaaacagtgtccggaatgcggtagcgaacttgtacgattagatgaggaagtagcacta
agatgcatgaatccaaaatgtccggcacaaattcgagaaggattgattcatttcgtatcg
agaaatgcgatgaatatcgaaggactgggggagcgggtcattactcaacttttttcagaa
aaattgattcgagatgtggcagatatttataacctaaagcgggaacaacttattcaactt
gaacggatgggagaaaaatccgtttctaatctccttttctccatcgaagcatcgaaaaat
aattccctagaacggctccttttcggactaggtattcgtcatgtcggaagcaaagctgcg
aaaattttagcagaaaaatacggacatatcgatcggctgatggaagcgacggaagaagag
ttacaaagcattcatgaagttggggaaaaaatggcgaattcggttgttacttattttcaa
atgccccaagtaaaagaattgataaaaaaattaagagcatccggtgttaatcttgaatac
aaaggtcccaaaaaggatgaggggaagattattgaatccgttttgacagggaaaaccgtc
gtattaactggaaagttagaacaattaacgcgaaatgaagcaaaagagcaactggaattg
atgggggcaaaagtaacgggaagtgtaagtaaaaaaacagatattgttattgcaggtttt
gacgcaggatcaaaattgacaaaagcccaagatttaggtattgaaatatgggatgaaaaa
cgattattgatggaattgaaccgaagggaaagcgaataa
DBGET
integrated database retrieval system
