Flavobacterium humidisoli: M0M44_14955
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Entry
M0M44_14955 CDS
T08925
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fhu
Flavobacterium humidisoli
Pathway
fhu03030
DNA replication
fhu03410
Base excision repair
fhu03420
Nucleotide excision repair
fhu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M0M44_14955 (ligA)
03410 Base excision repair
M0M44_14955 (ligA)
03420 Nucleotide excision repair
M0M44_14955 (ligA)
03430 Mismatch repair
M0M44_14955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fhu03032
]
M0M44_14955 (ligA)
03400 DNA repair and recombination proteins [BR:
fhu03400
]
M0M44_14955 (ligA)
Enzymes [BR:
fhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M0M44_14955 (ligA)
DNA replication proteins [BR:
fhu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M0M44_14955 (ligA)
DNA repair and recombination proteins [BR:
fhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M0M44_14955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M0M44_14955 (ligA)
MMR (mismatch excision repair)
DNA ligase
M0M44_14955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M0M44_14955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
Zn_Ribbon_TF
Auto_anti-p27
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
UPZ14051
UniProt:
A0ABY4LR23
LinkDB
All DBs
Position
3479619..3481622
Genome browser
AA seq
667 aa
AA seq
DB search
MSIQETIQALRNELNQHNYNYYVLDNATISDYDFDIKLKELQDLENKHPEFFDENSPTQR
VGGTVTKNFKTIAHQYRMYSLDNSYSKEDLLDWENRIQKVLGNVNLQYTCELKYDGASIS
ITYENGKLVQALTRGDGFQGDEVTSNIKTIKSVPLHLKGNYPDKFDIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYFVTGNNLPFKTQFEGLEL
ARSWGFKVPKEAKLVNSMQEVFDFIDYWDVHRHNLPYETDGVVIKVNSIQHQEELGYTAK
SPRWAIAYKFKSEQVSTKLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIAVDLEKRPEDSEKTHYITHCPECQTELVRNEGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVTLLFKNDLVHNYADLYELKVEDILHL
ERMAKKSAENLVNGVQKSKEIPFESVLFALGIRFVGETVAKKLAKHYKNIDALAQASLMD
LILVDEIGERIAKSVIEFFENEENRKIIERLKSYGIQFEIEEKINPNATDKFVGKTFVVS
GVFSQFSRDELKKAIEDNGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNITILSEEDF
INKLNEA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagcattcaagagactattcaagcattacgaaatgaacttaatcagcacaactataat
tattatgtgttagacaatgctacaatttcagattatgattttgatattaagctaaaagag
cttcaggatttagagaataaacatccagagttttttgacgaaaattcgccaactcagcga
gtaggaggaactgttaccaaaaatttcaaaacaatagcgcatcaatacagaatgtattct
ttggataattcttattctaaagaagatcttttagattgggaaaaccgcattcagaaagtt
ttaggaaacgtgaacttgcaatacacttgcgaattaaaatatgacggagcctcaataagt
attacgtacgaaaacggaaaattagttcaggccttaacccgtggagatggttttcaagga
gatgaggtaactagcaacataaaaaccataaaatcagttccgttgcatttgaaaggaaat
tatcctgataaatttgacattcgtggagaaattattcttccgtttgctggttttgaaaaa
atgaatcaagaattaatagaaattggcgaaactccatattcaaacccaagaaatacagct
tcgggaagtttaaaattacaagatagtgctgaggtagctaaacgtccgctagaatgtttg
ctttattttgttacaggaaacaacctgccttttaaaacgcaatttgaagggttagaatta
gctagaagctggggctttaaagtgccaaaagaagcaaaactagttaatagtatgcaagaa
gtttttgactttattgattattgggatgttcaccgtcataatttgccttatgaaacagat
ggagttgttataaaagtcaacagcattcagcatcaggaagaattaggatatacagcaaaa
tcgccacgttgggcaattgcttacaaatttaaatcagaacaagtttcaaccaaattaaaa
tcaatttcgtatcaagttggaagaactggagctataacaccagttgccaatctagaacct
gttcagctagctggaactattgtaaaaagagcttctcttcataatgccgatcaaattgaa
aaattagatattagaataaatgatactgtttttgttgaaaaagggggagaaattatccct
aaaatcattgcagtagatttagagaaacgaccagaagattcagaaaaaacgcattatatc
acgcactgtccagaatgtcagacagaattggttagaaacgaaggagaagccaatcattat
tgccctaatttttatggatgccctccgcagattataggaagaattcagcactatatttca
agaaaagcaatggatattgaaggacttggaggagaaacagtgacgctgcttttcaaaaat
gatttagtgcataactacgctgatttgtacgagcttaaagtagaagatattttgcatcta
gaacgaatggctaaaaaatcagctgaaaacttggtgaacggagtgcagaaatcaaaggaa
attccgttcgaaagcgtattatttgcacttggaattcgttttgttggagaaacagttgcc
aaaaaactagccaagcattacaaaaatatagatgctttagcgcaggcatcattaatggat
ttaattttggttgatgaaattggagaaagaattgctaaaagtgttattgaattcttcgaa
aatgaagaaaatagaaaaattattgaacgattaaaaagttatggaattcaatttgaaatt
gaagaaaaaataaacccaaatgctactgataaatttgttggaaaaacttttgtggtttct
ggcgtctttagtcaattttctagagatgaattaaagaaagccatcgaagataacggagga
aaagtaggaagctcaatttctgcaaaaacagattttgtagtcgcgggagataatatgggg
ccagcaaagctagagaaagcaacaaagttgaacatcactatattatcagaagaagacttt
ataaacaaattgaatgaagcctaa
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