Fervidobacterium islandicum: NA23_03285
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Entry
NA23_03285 CDS
T04215
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fia
Fervidobacterium islandicum
Pathway
fia03030
DNA replication
fia03410
Base excision repair
fia03420
Nucleotide excision repair
fia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NA23_03285 (ligA)
03410 Base excision repair
NA23_03285 (ligA)
03420 Nucleotide excision repair
NA23_03285 (ligA)
03430 Mismatch repair
NA23_03285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fia03032
]
NA23_03285 (ligA)
03400 DNA repair and recombination proteins [BR:
fia03400
]
NA23_03285 (ligA)
Enzymes [BR:
fia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NA23_03285 (ligA)
DNA replication proteins [BR:
fia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NA23_03285 (ligA)
DNA repair and recombination proteins [BR:
fia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NA23_03285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NA23_03285 (ligA)
MMR (mismatch excision repair)
DNA ligase
NA23_03285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NA23_03285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
BRCT_2
DNA_ligase_ZBD
5_3_exonuc
DNA_pol_lambd_f
MS_channel_2nd
Motif
Other DBs
NCBI-ProteinID:
AMW32413
UniProt:
A0A1B0VIH0
LinkDB
All DBs
Position
712535..714553
Genome browser
AA seq
672 aa
AA seq
DB search
MVPEKIREEVEKLRREIEYHNYRYYVLASPVITDEEYDKLMQRLIELEEKYPELRTPDSP
TQRVGGQPIEGFETVEHSEPMLSLDNTYNEAEILNFHERVRKTVGDVEYVAELKIDGVSI
ALRYENGLLLKAITRGDGLKGDDVTANVKTVKSIPLRLPEPITIEVRGEIFMPVSYFEEY
NQQREEEGLAPFANPRNATAGTLHLLDPAEVAKRNLDSFMYYVVKPQQYGLKSQWEALEF
LKKLHFKVNPHNKLCESIEEVIEYWRKWSKERSNLEYWIDGVVVKVNDFEKQNELGWTAK
SPRWAIAFKFPAQQARTKIIAVSYQVGRTGVITPVAEFEPVELEGTIIKRASLHNFDYIK
EKDIKIGDYVLIEKAGGIIPQVVHVVKDLRTGQEQPITVPDNCPVCGGPVGKESKEYVAY
KCLNPHCPAKLKRHLEVFVSRQALDIQGLGPKIISKIVDAGLVKDIADIFYLTVFDLAQI
SGLGPKMISNILSQIEKAKSVSFDRLIVGLGIPGVGERTAKILARKFRSLDEITNSTIAD
LLLIEGIGEDTAKSIYDYFKLPKTKEIIEKLKKAGVNTKSDIEVKEDVLTGLTFCVTGTL
KSFSREEIKRFIESLGGHFTDNISKKTDYLIVGENPGSKLQKAQKYGVKTITEDEFLQMV
EERRAQKGGQQE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggttccagaaaaaataagggaagaggtagaaaagctaagaagagagattgagtatcat
aactatcgttactacgttttggcaagcccagttataaccgatgaagaatatgataaatta
atgcaaaggcttatcgagcttgaggaaaaatatccggaactcagaacgccagattcacca
acccagagggttggtggtcagcctattgaaggttttgaaacagttgagcacagcgaacca
atgctgagcttggataacacctataacgaggctgaaatactgaacttccatgagcgcgtc
agaaaaacggttggagatgttgagtacgttgccgaactgaaaatagatggagtttccatt
gctctcaggtacgagaacggattgttgttaaaagcaattacaagaggtgacggattaaaa
ggtgacgatgttacagctaacgtgaagaccgtgaaatctatccctcttagactgccggag
ccgattacgatagaagttcgtggcgaaatattcatgcccgtgagttactttgaagagtac
aaccagcaaagggaagaagaaggccttgcgcccttcgcaaatccaaggaatgcaactgca
ggtacgctccatctattagatccggcagaagttgcaaagagaaatttggactcgttcatg
tactacgtagttaaaccacagcagtatgggttgaagagtcagtgggaggccttggaattt
ctcaaaaaattacacttcaaagtaaacccacacaacaaactgtgtgagtcgatagaagag
gtcattgagtactggcgcaagtggtccaaggaaagaagcaatcttgaatactggatcgat
ggtgtagttgtaaaggtaaatgattttgaaaaacaaaatgaacttggctggactgcaaaa
tcaccgcgttgggctatcgcatttaaattccccgctcaacaagcacggacaaaaattata
gctgtgtcctatcaagtgggccgcacaggtgtgataactcctgttgccgaattcgagccc
gttgaactcgagggtactatcattaaaagagcttctttgcataattttgactatataaag
gaaaaagacataaaaataggtgattatgttttgatagaaaaagccgggggtataattcct
caggtcgtccatgtggttaaagacttaagaactgggcaggaacaacctataaccgttccc
gacaactgtcctgtatgtggtggtcccgtaggaaaggaatcaaaggaatacgttgcgtac
aaatgtttaaatccacactgtccggcgaagttgaaaagacatttggaggttttcgtttcg
aggcaggcactcgatatacaaggtctcggaccgaaaattatttcaaagatcgttgatgca
ggtttagttaaagacatagctgatatattctacttgacagtttttgacctcgcacaaatt
agtggtcttggacctaagatgatttcaaacatactatcgcaaattgagaaagcaaaatcc
gtgagttttgacagattgattgttggacttggaattcctggtgttggtgagcgcacagcc
aagatattggcaaggaaattccgctcgctggatgaaatcacgaattctacaatagctgat
ttattgttaatagagggcataggtgaggacacagcaaagagtatatacgactatttcaaa
cttccaaagacgaaggaaattatagaaaaacttaaaaaggctggtgtgaacacaaagagc
gatatcgaagtcaaggaagatgtgctaactggtttaactttttgcgtaacaggaacgctt
aaatctttctcaagggaagaaataaagagattcatcgaatctttaggtggtcacttcacc
gataatatttccaagaaaacggattatctaatcgttggtgaaaaccccggaagtaagcta
caaaaagcgcagaaatatggggtcaaaaccataactgaagacgaatttctacaaatggta
gaagaaagaagagcgcaaaagggtggacaacaggaatga
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