Fibrella sp. ES10-3-2-2: A6C57_20015
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Entry
A6C57_20015 CDS
T04805
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fib
Fibrella sp. ES10-3-2-2
Pathway
fib03030
DNA replication
fib03410
Base excision repair
fib03420
Nucleotide excision repair
fib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6C57_20015
03410 Base excision repair
A6C57_20015
03420 Nucleotide excision repair
A6C57_20015
03430 Mismatch repair
A6C57_20015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fib03032
]
A6C57_20015
03400 DNA repair and recombination proteins [BR:
fib03400
]
A6C57_20015
Enzymes [BR:
fib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6C57_20015
DNA replication proteins [BR:
fib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6C57_20015
DNA repair and recombination proteins [BR:
fib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6C57_20015
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6C57_20015
MMR (mismatch excision repair)
DNA ligase
A6C57_20015
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6C57_20015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
Zn_ribbon_8
gp32
Zn_Ribbon_TF
Zn_ribbon_Top1
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
ARK12439
LinkDB
All DBs
Position
complement(4975429..4977498)
Genome browser
AA seq
689 aa
AA seq
DB search
MSPQDRIQELTAQLNYYNDQYYQHSQSVIDDFTFDKLLAELQSLEKQYPEFTLPDSPTLR
VGGTISKEFPTVYHRFPMLSLGNTYSEADLTEFDARVRKGLNGEVYEYICEQKFDGVALS
MTYENGLLVQGATRGDGVRGDDITNNIRTIRTVPLRISAESLPALFEVRGEGFLPLAEFE
RINKEREDIGEPLLANPRNAASGTFKQQDSSAVAKRRLDCYLYSFLSDESVFSTHEESLI
QMAKWGFNVSPTWEKCPDIDAVMAYIAKWETRRFSLPLNTDGIVIKVNRYDQQRELGYTA
KSPRWAIAYKYKTVAATTTLNSVSYQVGRTGAVTPVAHLTPVLLAGTVVKRASLHNANEI
ARLGIMLGDTVFVEKGGEIIPKITGVDLEQRTDAVQPIAYPTHCPACGTELVRREKEAHF
YCTNEKHCPPQRQARFEHFIQRRAMNIESLGEGKIELLIDRGLVDSPADLYELTNEKLLG
LQKTYPAASVVHEDGSEEPGKTRTVKFGQKTVDNILSAIERSKAQSFANVLFALGIRYVG
TTTADRLVDYFGSIDALMAAPLDTLSGVPDVGPRIAESAYLWFQDEENKRYIDRLRAAGL
TFISEKKEVAQESESLVGKTFLYTGTFANFSREALEERIAANGGRLLSGVSKKLNYLIVG
ENAGPSKVQKAQQLNVTQLSEDEFIAMLG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaagaccgtatccaggagttgaccgctcagctcaattattacaacgatcag
tattaccaacatagtcagtcggttatcgatgattttacgttcgataagctgctggctgaa
cttcagtcgcttgaaaagcaatatcctgaatttacgttgcccgattcgccaacactacgt
gtggggggcacgattagtaaagagtttccgacagtttatcatcgttttccgatgctctcg
ctcggtaatacgtactctgaggctgacctgaccgagtttgatgcacgcgtgcgtaaaggc
ctgaatggggaggtgtatgagtatatctgtgaacaaaaatttgatggggttgcgctcagc
atgacctacgagaatggtctcctggtgcagggagccacgcgtggtgacggggttcgtggc
gatgatatcaccaacaatatccgtaccattcgaacggtgccactccgtatttcggctgag
tccttgcccgctcttttcgaggtgcgtggtgagggttttctgcccctggccgagtttgaa
cggattaacaaggagcgggaagatattggtgagcccttattagctaatccccgtaatgca
gcctcaggtacgttcaagcagcaggattcgtcggccgtggccaaacgccgtctggactgt
tacctctactcgtttctttccgacgaaagtgtgttcagtacgcatgaagaaagtttgata
caaatggccaaatggggattcaatgtgtcgccaacctgggagaaatgccccgatattgat
gcggttatggcttacattgccaagtgggagaccaggcggttttcgttgccgcttaatacc
gatgggatcgtgatcaaagtgaaccgctatgatcagcagcgcgaactgggctatacagcc
aagagtccgcgttgggcaattgcctataaatacaagaccgtggctgctaccacgacgctt
aacagtgttagttaccaggtaggccgtacgggcgcggtaacgcccgtggcgcacctgact
ccggtgttgctggccggtactgtggtaaagcgggcgtcgctccacaacgccaatgagatt
gcccgccttggtatcatgctgggagatacggtctttgtggagaaaggtggggagatcatt
ccgaaaataacgggtgtcgacctggagcaacggacagatgccgtacaaccgatcgcttac
ccgactcactgccccgcttgcggtaccgaactagttcgccgtgagaaagaagcccatttc
tactgcaccaacgaaaagcattgtccgccgcaacgacaggcccgctttgagcattttatc
cagcggcgagccatgaacatcgaaagcctgggtgagggtaagatcgaactgctgatcgat
cgaggtctggttgactcgcctgctgatctgtatgaattgacgaacgaaaaactactgggc
cttcagaagacgtacccagctgcttcggttgttcatgaagatggatcggaagagccaggt
aaaaccagaacggtaaaatttgggcagaaaacggtggataatatcctgtctgcgatcgaa
cgatcgaaggcacaatcttttgccaatgtgctgtttgcgctggggatcaggtacgttggt
actaccaccgccgatcggctggtcgattattttggttcaatcgatgccctgatggctgct
ccgcttgacaccctgtctggtgttccggatgtggggccgcgtattgccgaaagtgcctat
ctctggtttcaggacgaagagaataaacgctacattgaccgattgcgggcggctgggctg
acattcatttctgagaaaaaagaggtagctcaggaaagcgagtcgctggttggtaagacc
tttctgtataccggtacgttcgccaactttagtcgcgaggcactcgaagagcgaattgcc
gccaacggagggcgtttgctgagcggggtctccaagaaactgaattacctgattgttggc
gagaacgccggcccttctaaggtgcagaaggctcagcaactgaacgttactcaacttagt
gaggatgagttcatcgctatgttgggttaa
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