Faecalibacillus intestinalis: Fi14EGH31_18650
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Entry
Fi14EGH31_18650 CDS
T06868
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fit
Faecalibacillus intestinalis
Pathway
fit03030
DNA replication
fit03410
Base excision repair
fit03420
Nucleotide excision repair
fit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fi14EGH31_18650 (ligA)
03410 Base excision repair
Fi14EGH31_18650 (ligA)
03420 Nucleotide excision repair
Fi14EGH31_18650 (ligA)
03430 Mismatch repair
Fi14EGH31_18650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fit03032
]
Fi14EGH31_18650 (ligA)
03400 DNA repair and recombination proteins [BR:
fit03400
]
Fi14EGH31_18650 (ligA)
Enzymes [BR:
fit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fi14EGH31_18650 (ligA)
DNA replication proteins [BR:
fit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fi14EGH31_18650 (ligA)
DNA repair and recombination proteins [BR:
fit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fi14EGH31_18650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fi14EGH31_18650 (ligA)
MMR (mismatch excision repair)
DNA ligase
Fi14EGH31_18650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fi14EGH31_18650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
HHH_5
Nlig-Ia
RNA_ligase
Relaxase_C
5_3_exonuc
DUF1936
Motif
Other DBs
NCBI-ProteinID:
BCL58153
UniProt:
A0A7I8E293
LinkDB
All DBs
Position
complement(1791593..1793587)
Genome browser
AA seq
664 aa
AA seq
DB search
MDDLKRYEELVKTIEYHNDRYYNQDDPEISDYEYDMMMKELKKLEKDHPEYVTPSSPTQH
VGGSAKREAGVLVRHRVPMLSLQDVFSKEEVQEFVESMQETLVDPVFVVEYKIDGLSMAL
RYENGLLTTAITRGDGIIQGEDVTVNAKVIKDVKNKLKEPIEYLEVRGEVYMTNEAFDKV
NEIQELNNKKTFANPRNCAAGTLRQLDSRITKQRNLSMFIFNIQDIRGKEITSHSQGYEY
LKIQGMKVIDNYQICHSFEEVWKSIEMIGESRDQLGYDIDGAVVKIDSYAQRQQLGQTAK
VPRWAVAYKYPPEEKETKLLDIELSVGRTGRITPTAIFEPVRLCGTTVSRATLHNQDFID
SLDVRLGDTIIVYKSGEIIPKVKGVNKDKRPAGSVPYQIGNTCPVCGAPTYQEEGTVDIK
CSNPTCPSKLVRNVVNFVGRDAMDIKGFGLSYVETLIDQGYIHDVSDIYILKDKRQELLD
KKVIGLVKSTDNLLNAIEKSKENDATKVLTALGISNIGKSAAKSLMKKFKTMDQLMNASY
EQLIEVNDIGDTSAQILIDYFKDEKNKEIIHKLEHYGLKMEIEDTQSSSILENMTFVVTG
TLPTLSRKEAATLIENNGGKVSGSVSKKTTYLLAGENAGSKLTKAQSLNIPVLTEEMFME
MIKS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaaaaagatatgaagaattagtaaaaacaattgaatatcataatgatcgt
tattataaccaagacgatccagaaataagtgattatgaatatgatatgatgatgaaagaa
cttaaaaaactagaaaaggatcatcctgaatatgtcacaccaagttcgccaactcaacat
gttgggggaagtgctaaaagagaagccggtgttttagttagacatcgtgtcccaatgctt
tctttacaagatgttttttctaaagaagaagttcaagaatttgtggaatcaatgcaagaa
acgttggttgatccagtatttgtggttgaatataaaattgatggtttatcaatggcttta
agatatgaaaatggtcttttaacaacggctattactcgtggagatggaatcattcaagga
gaagatgtaaccgttaatgctaaagtaatcaaagatgttaaaaataaattaaaggaacct
attgaatatcttgaagtacgtggtgaagtttatatgacaaatgaggcctttgataaagtt
aatgaaattcaagagcttaataataaaaaaactttcgcaaatcctagaaactgtgcggca
ggaacattacgtcaattagatagtcgtattacaaaacaaagaaatctttctatgtttatt
tttaatattcaagatattcgaggaaaagaaattacgagtcatagtcaaggttatgaatat
ttaaaaattcaaggaatgaaagtcattgataattatcaaatttgtcatagctttgaagaa
gtatggaaatctattgagatgattggtgaaagtagagatcaattaggctatgatatagat
ggtgccgttgttaaaattgatagctatgcacaaagacaacaattagggcaaacagccaaa
gtgcctcgttgggccgtggcttataaatatccgccagaagaaaaagaaacaaagctttta
gatatagaactttcagttggaagaacaggtagaattacaccaacagctatctttgaacca
gtccgtttatgtggaacaacggtttcaagagcaacgcttcataatcaagattttattgat
agtttagatgtacgtcttggcgatacaatcattgtttataaatcaggagaaatcattcct
aaagtaaaaggtgtcaacaaagataaaagacctgcaggaagtgttccttatcaaatagga
aatacgtgtcctgtatgtggggcaccaacgtatcaagaagaggggacagttgatattaaa
tgttctaatcctacatgtccaagtaaactagttagaaatgttgttaattttgtaggaaga
gatgccatggatattaaaggttttggtttatcgtatgttgaaactttaatagatcaaggg
tatattcatgatgtcagtgatatttatattttaaaagataaaagacaagaacttttagat
aaaaaggtaattggtcttgttaaaagtacagataatttattaaatgccattgaaaaaagt
aaagaaaatgatgcaacgaaggttttaactgctttaggtatttcaaatattggtaaatcg
gctgcaaaatctttaatgaagaaatttaaaacgatggatcaattgatgaatgcttcttat
gaacaacttattgaagtcaatgatattggtgataccagtgcacaaattttaattgattat
tttaaagatgaaaagaataaagaaatcattcataaattagagcactatggattaaagatg
gaaattgaagatactcaaagttcatctatattagaaaatatgacttttgttgttacagga
acacttcctacattatctagaaaagaagcagctactttaatagaaaataatggtggtaaa
gtttctggatccgtttctaaaaagacaacctatttattagcaggggaaaatgcaggtagt
aagcttacaaaagcacaatctttaaatattccagttttaacggaagaaatgtttatggaa
atgataaaatcataa
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integrated database retrieval system
