Candidatus Filomicrobium marinum Y: BN1229_v1_3984
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Entry
BN1229_v1_3984 CDS
T03857
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fiy
Candidatus Filomicrobium marinum Y
Pathway
fiy03030
DNA replication
fiy03410
Base excision repair
fiy03420
Nucleotide excision repair
fiy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1229_v1_3984 (ligA)
03410 Base excision repair
BN1229_v1_3984 (ligA)
03420 Nucleotide excision repair
BN1229_v1_3984 (ligA)
03430 Mismatch repair
BN1229_v1_3984 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fiy03032
]
BN1229_v1_3984 (ligA)
03400 DNA repair and recombination proteins [BR:
fiy03400
]
BN1229_v1_3984 (ligA)
Enzymes [BR:
fiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN1229_v1_3984 (ligA)
DNA replication proteins [BR:
fiy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN1229_v1_3984 (ligA)
DNA repair and recombination proteins [BR:
fiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN1229_v1_3984 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN1229_v1_3984 (ligA)
MMR (mismatch excision repair)
DNA ligase
BN1229_v1_3984 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN1229_v1_3984 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CPR22551
UniProt:
A0A0D6JKT3
LinkDB
All DBs
Position
1:3888719..3890839
Genome browser
AA seq
706 aa
AA seq
DB search
MADEDLRKIDVEALTPGQAASELERLAREIAHHDALYYAQDNPEISDAAYDALRRRNEAI
EARFPELRRADSPSERVGMAPSEGFGKIRHRVAMLSLDNAFEDEDVVEFVGRVRRFLGLV
EDAPLELVAEPKIDGLSISLRYDRGRFVEAATRGDGTQGENVTANVLTIKSIPHVLKGKD
VPETIDIRGEIFMDHADFQNLNVQQAASGAKIFANPRNAAAGSLRQLDPKLTAKRPLRFF
AYGWGEASSLPTETQSGVVEAMGRWGLPINPRMTLCAGAEELLAYYQQLAMDRARLDYDI
DGVVYKVNRLDYQLRLGFISRSPRWATAHKFPAEQAMTILRDIDIQVGRTGALTPVAKLE
PVTVGGVVVSNATLHNEDEIARKDIRIGDTVVVQRAGDVIPQIVSVVLEKRPEGAEAYQF
PKVCPVCGSHAVRETDEKSGRRDVVRRCTGGLICEAQQVERLKHFVSRNAFDIEGLGEKT
IAAFHRDGLIQSPADIFRLQHKDTQADLKIEEREGWGPQSAQKLFASIEARREIGLDRFI
YALGIRHVGETTAKVLARSYGTLENFEAQMRAAGQDEAGEAFADLVNINGIGKVVAEAIA
EFFAEPHNIEVLRELHKEVRTVPVETVASDTAVAGKTVVFTGSLEKMTRSEAKAQAERLG
AKVAGSVSKKTDYVVAGADAGSKLNKARELGVTVLSEDDWLGLTGG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgaggacttgcgcaaaatcgatgttgaggcgctgacgccggggcaagcggct
agcgagttggagcggcttgcgcgagagatcgcccaccacgatgcgctttattatgcgcag
gataatccagaaatatcggacgcggcctatgatgccttgcgtcgccggaacgaagctatc
gaagcgcgatttcctgaactccggcgcgccgactctccctcagagagagtcggtatggcg
ccgtctgagggttttggaaagattcgccatcgtgtggcgatgctctcgctcgataatgcg
ttcgaggatgaggatgttgttgaatttgttggccgggttcgccgttttttgggcttggta
gaggacgcgccgctcgaacttgtggcagagcctaagatcgatggtttgtcgatatcgttg
cgttatgatcggggccggtttgtcgaagcggcaacacgtggtgacgggacccaaggtgaa
aacgtaacagccaacgtgttgaccatcaaaagtattccgcatgtgctgaagggcaaggat
gtcccggagaccatcgatatccgcggcgagatatttatggatcacgccgactttcaaaat
ctcaacgtacagcaggcggcttccggggctaagatttttgcgaatccgcgcaatgcggcg
gcagggtccctacggcaactcgatccgaagcttaccgcgaagcgaccgttgcggtttttc
gcttatggatggggcgaggcgagcagtctacctacggagacgcagtccggcgtcgttgag
gctatgggacgctggggattgccgatcaatccgcgcatgacgctgtgtgccggtgcggaa
gaactcctagcttactatcagcaactggccatggatcgtgcgcgactcgattacgatatc
gacggtgtcgtctacaaggtcaatcggctcgattatcaattgcgcctggggttcatttcg
cggtcaccgcgatgggcaacggctcacaaattccccgccgagcaggcgatgacgatcctg
cgggacattgatattcaggtgggtcgcacaggcgcactcacgcctgttgccaaacttgag
ccggttacggttggtggggtggttgtttcaaacgccacgctgcataacgaggatgaaatc
gcgcgtaaggatatccgtattggcgataccgtagtcgtgcagcgggccggtgacgtgatc
ccgcagatcgtatcggtcgttttagagaagcggccggaaggtgctgaagcctatcaattc
ccgaaagtctgccccgtgtgcggcagccatgctgtgcgggaaacggatgagaaatccggg
cgccgagacgttgtccggcggtgcacaggagggctcatctgcgaggcgcagcaagtcgag
aggttgaagcacttcgtttcccgcaacgccttcgatatcgaagggctcggggaaaagacg
atcgcggcttttcatcgtgacggtttaattcagtctcctgccgatattttccgactgcag
cacaaagatacgcaagctgatctgaagatcgaagaacgggaaggctgggggccgcaatcg
gcgcaaaagttgttcgcctccatcgaagcgcgccgtgaaattggattggatcgtttcatt
tatgcgctaggtatccggcacgtgggggaaacgacagccaaggttctcgcgcgcagctac
ggcaccctagaaaattttgaagcgcagatgcgtgccgccgggcaggacgaggccggcgag
gcgtttgccgatctcgtcaatatcaatggcatcggcaaggtcgttgccgaagcgattgcc
gagttctttgcggaacctcacaacattgaggttttacgggagctccacaaagaagtgcgg
accgtaccggtcgagaccgtcgcgagcgataccgccgttgcaggcaagactgtcgtcttt
actggaagcctcgagaaaatgactcgcagcgaggcgaaagcacaggcggaacgtctcgga
gctaaagtggcgggatcggtgtctaagaagaccgactatgtcgttgccggtgcggatgcg
ggctctaagttgaacaaagcacgagagcttggcgttaccgtgctttcggaagatgattgg
ctcggtttgacgggcggctag
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