Flavobacterium anhuiense: BB050_04296
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Entry
BB050_04296 CDS
T04718
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fjg
Flavobacterium anhuiense
Pathway
fjg03030
DNA replication
fjg03410
Base excision repair
fjg03420
Nucleotide excision repair
fjg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fjg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BB050_04296 (ligA)
03410 Base excision repair
BB050_04296 (ligA)
03420 Nucleotide excision repair
BB050_04296 (ligA)
03430 Mismatch repair
BB050_04296 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fjg03032
]
BB050_04296 (ligA)
03400 DNA repair and recombination proteins [BR:
fjg03400
]
BB050_04296 (ligA)
Enzymes [BR:
fjg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BB050_04296 (ligA)
DNA replication proteins [BR:
fjg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BB050_04296 (ligA)
DNA repair and recombination proteins [BR:
fjg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BB050_04296 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BB050_04296 (ligA)
MMR (mismatch excision repair)
DNA ligase
BB050_04296 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BB050_04296 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AOC97374
LinkDB
All DBs
Position
complement(5036489..5038492)
Genome browser
AA seq
667 aa
AA seq
DB search
MSIQETIQALRNELNQHNYNYYVLDNATISDYDFDIKLKELQDLEDKHPEFFDENSPTQR
VGGAVTKNFKTVAHQYRMYSLDNSYSKEDLLDWENRIQRVLGNVDLQYTCELKYDGASIS
ITYENGKLVQALTRGDGFQGDEVTTNIKTIKSVPLHLKGNYPDKFDIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLECLLYFVTGNNLPFKTQYEGLEL
ARSWGFKVPMEAKLVNSMEEVFDFIDYWDTHRHNLPYETDGVVIKVNSIQHQEELGYTAK
SPRWAIAYKFKSEQVSTVLKSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRINDTVFVEKGGEIIPKIIAVDLEKRPENSEPTHYIAYCPECHIELVRNVGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFKNGLVHNYADLYELKVEDILHL
ERMAQKSAENLVNGVQKSKEIPFESVLFALGIRFVGETVAKKLAKHYKNIDALAQASLMD
LVLVDEIGERIAKSVVEFFENEENRKIIERLKSYGIQFEIEEKINPNATDKFVGKTFVVS
GVFSQFSRDELKKTIEDNGGKVGSSISAKTDFVVAGDNMGPAKLEKATKLNIPILSEEDF
INKLNEA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagcattcaagagactattcaagcattacgaaatgaacttaatcaacacaactataat
tactatgtgttagacaatgctacaatttcagattatgattttgatattaaattaaaagaa
cttcaggatttagaagataaacatccagagttttttgatgaaaactcgccaacacaaaga
gtaggtggagctgttaccaaaaatttcaaaacagttgcgcatcagtatagaatgtattct
ttggataattcttattctaaagaagatcttttggattgggaaaaccgtattcaaagagtt
ttagggaatgttgacttgcaatacacttgtgagctaaaatatgatggagcttcgataagc
attacttacgaaaacggaaaactagttcaagccttgacacgtggagatggttttcaagga
gatgaggtcactactaatataaaaactataaaatcagttcctttacatttgaaaggaaat
tatccagataaatttgatattcgaggcgaaataattctgccatttgctggttttgaaaag
atgaatcaggaattaatcgaaattggcgaaacaccttattcaaatccaaggaacacagct
tcaggaagtttaaaattgcaagacagcgctgaggttgccaaacgtccgttggagtgtctt
ctttattttgtgacagggaataatttgccattcaagactcaatatgaaggattggaattg
gctagaagctggggctttaaagtgcctatggaagcaaaactagtcaacagtatggaggag
gtttttgactttattgattattgggatacgcaccgccataatttaccttatgaaactgat
ggagttgtgataaaggtcaatagtatccagcatcaggaagaattagggtatacagcaaaa
tcaccacgttgggcaattgcttacaaattcaaatcagaacaagtttcaactgtattaaaa
tcaatttcatatcaagtcggaagaacgggagctataacaccagtggcgaatttggagcct
gtacagcttgcaggtaccattgtaaaaagagcttctcttcataatgccgatcagattgaa
aaattagacatcagaataaacgatactgtttttgttgaaaaaggaggagaaatcattcca
aaaatcattgcagtagatttagaaaaacgtcctgaaaattcagaaccaacccattatatt
gcgtattgtccagaatgccacatcgaattggttcgaaatgttggtgaagccaatcattat
tgtcctaatttctacggatgtcctccgcaaattatcggaagaatccagcattatatttca
agaaaagcaatggatattgaaggacttggaggtgaaactgtcgctttattatttaaaaat
ggtttggtacacaattatgcagatttatatgaattgaaagttgaggatattctgcatttg
gaaagaatggctcagaaatctgcagaaaatttggtaaatggagttcagaaatcaaaagaa
attccgtttgagagcgtcttgtttgcgcttggaatccgttttgtgggagaaactgtagct
aaaaaacttgctaaacattataagaatatcgatgctttagcccaagcttctttaatggat
ttagttttagttgatgaaattggagaaagaatcgccaaaagtgttgtcgaattcttcgaa
aatgaagaaaaccgaaaaattattgagcgtttaaaaagttatggaatccaatttgaaatt
gaagaaaaaataaacccaaatgctactgataaatttgttggaaaaacttttgtggtttct
ggcgttttcagtcaattttctagagacgaattaaagaaaaccatagaagataacggaggg
aaagtaggaagctcaatttctgcaaaaacagattttgtagtggcaggagataatatggga
ccagcaaaactggaaaaagcaacaaaactaaacatccctatattatcagaagaagatttt
ataaacaaactgaatgaagcttaa
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