Flammeovirga kamogawensis: KM029_03145
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Entry
KM029_03145 CDS
T07412
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fka
Flammeovirga kamogawensis
Pathway
fka03030
DNA replication
fka03410
Base excision repair
fka03420
Nucleotide excision repair
fka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KM029_03145 (ligA)
03410 Base excision repair
KM029_03145 (ligA)
03420 Nucleotide excision repair
KM029_03145 (ligA)
03430 Mismatch repair
KM029_03145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fka03032
]
KM029_03145 (ligA)
03400 DNA repair and recombination proteins [BR:
fka03400
]
KM029_03145 (ligA)
Enzymes [BR:
fka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KM029_03145 (ligA)
DNA replication proteins [BR:
fka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KM029_03145 (ligA)
DNA repair and recombination proteins [BR:
fka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KM029_03145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KM029_03145 (ligA)
MMR (mismatch excision repair)
DNA ligase
KM029_03145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KM029_03145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
TRPM_tetra
Motif
Other DBs
NCBI-ProteinID:
QWG07945
UniProt:
A0ABX8GWG6
LinkDB
All DBs
Position
1:complement(790046..792073)
Genome browser
AA seq
675 aa
AA seq
DB search
MTIEKAKERVDELSKKLHDLNKRYYVDGVQDISDQEFDLMMHELQELEVNFPTLLKTTSP
TQRVGGEPTKNFKTVAHESPMLSLSNTYNKEDLIEFNDRILKDLNTQVDYVCELKYDGVA
ISLIYEHGALIQAVTRGDGVQGDDVTVNARTIRSLPLQLVGDYPERFEVRGEVFMSKNSF
LENNKRIEFENVERVANNKKAQVLLANPRNACAGALKQQDPKKVAERKLDVYIYGIVGQV
ENITTHFDGLNKLKEWGFNLPNTYERVKSIDEVWAFIERWGDDRHNLPLETDGVVIKVDS
EEFHKKLGATAKSPRWAIAYKYKAEAAKTLLKSVTYQVGRTGAITPVANLEAVQLAGTTV
RRASLHNANEMARLDLHINDKVYVEKGGEIIPKITGVDVSERDQEAKPLEFITNCPACNS
VLERQEGEAQHYCLNITSCPPQVKGRIQHFVARKAMNIDSIGGETIDQLIEKGLISDVAD
FYDLTPEALSEKMERFKDKSIENLLNGVEASKNIPYERVLFALGIRHVGSTIAEKLCEVF
KNIEELLSATEEQIAEVYEVGGQIAKSIISFKEVPENLVLIERLKNAGLQFEVIEKETAG
TLEDKLFVCTGTFEIFSRNEMHDLIKEHGGKVRTSISAKIDYLVAGEKAGSKLKKAEKLG
ITVLTEEEFKNLIEG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacaatagaaaaagctaaagaacgcgttgatgagttatcaaaaaaacttcacgattta
aataaaaggtattatgtagatggtgttcaagatatttcagatcaagaatttgatttgatg
atgcatgaacttcaagaactagaagtgaatttccccacacttctaaaaacaacatctcca
acacaaagagtaggtggcgaaccaacaaagaattttaaaacagttgcacatgagtcacca
atgttatctctatcaaatacttataataaagaagatttgatagagtttaacgaccgtata
ctaaaagaccttaatacacaagttgattatgtatgtgaactaaagtatgatggtgtagct
atcagtttaatttatgaacatggtgcattaatacaagctgttacaagaggtgatggagtt
caaggtgatgatgttacagtaaatgcaagaactattcgttctcttcctttacaattagtt
ggagactacccagaacgatttgaggttaggggtgaagtgtttatgagtaaaaattcgttt
ttagaaaacaacaaacgtattgaatttgaaaatgttgaacgagtagctaataataagaaa
gctcaagtcttacttgctaatcctagaaatgcatgtgctggtgcattaaagcaacaagat
cctaaaaaagtagcagagcgaaaattagatgtttatatctacggtatagtaggccaggta
gaaaatattacaactcattttgatggactcaataagttaaaagaatggggttttaacctt
cctaatacttatgaaagagtaaagtccattgatgaagtttgggcatttattgaaagatgg
ggtgatgatagacataacttaccattagagactgatggagttgttataaaagtagatagt
gaagaatttcataaaaaattaggtgctaccgcaaaaagtccacgttgggcaattgcatat
aaatacaaagctgaagcagcaaaaactttattaaaatcagtcacttatcaagtaggaaga
acaggtgcaataactcctgttgcaaatctagaagcagtacagctcgccggaactactgta
agaagagcctctttacataatgccaatgaaatggctaggctagacttacacatcaatgat
aaagtctatgttgagaaaggtggtgagattataccaaaaattacaggagttgatgttagt
gaacgagatcaagaagcaaaacctcttgaatttataacaaattgtcctgcttgtaattct
gttttagaacgtcaggaaggagaagcccagcattattgcctaaatataactagttgtcct
ccacaagtgaaaggtaggatacaacattttgtagcacgaaaagctatgaatattgattct
ataggtggtgaaacaatagatcaattaattgaaaaggggttaatttctgatgttgctgat
ttttatgatttaacacctgaggcgctaagtgaaaaaatggaacgctttaaagataaatca
attgaaaatcttttaaacggggtagaagcttcaaagaatattccttatgaaagagttcta
tttgccttaggaattagacacgttggaagtaccatagcagagaaattatgtgaggtattt
aagaatatagaagaactactgagtgctacagaagaacaaatagctgaagtttatgaagta
ggtggtcaaatagctaaaagtataatcagttttaaagaagttcctgaaaatttagttctt
attgagcgtcttaaaaatgcgggtttacaatttgaagttattgaaaaagaaactgcaggt
actttagaagataagctttttgtttgtacaggaacttttgaaatttttagtagaaatgaa
atgcatgatcttattaaagaacatggagggaaagtaagaacttctatatctgctaaaatt
gattatttagttgctggtgaaaaagcaggttcaaaattgaaaaaagcagagaaactagga
attactgttttaacagaagaagaatttaaaaatttaatcgaagggtaa
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