Flavobacterium keumense: MG292_09060
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Entry
MG292_09060 CDS
T09003
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fke
Flavobacterium keumense
Pathway
fke03030
DNA replication
fke03410
Base excision repair
fke03420
Nucleotide excision repair
fke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MG292_09060 (ligA)
03410 Base excision repair
MG292_09060 (ligA)
03420 Nucleotide excision repair
MG292_09060 (ligA)
03430 Mismatch repair
MG292_09060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fke03032
]
MG292_09060 (ligA)
03400 DNA repair and recombination proteins [BR:
fke03400
]
MG292_09060 (ligA)
Enzymes [BR:
fke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MG292_09060 (ligA)
DNA replication proteins [BR:
fke03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MG292_09060 (ligA)
DNA repair and recombination proteins [BR:
fke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MG292_09060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MG292_09060 (ligA)
MMR (mismatch excision repair)
DNA ligase
MG292_09060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MG292_09060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
EcoRI
Auto_anti-p27
zf-C4_Topoisom
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
WGK94225
LinkDB
All DBs
Position
complement(2010185..2012182)
Genome browser
AA seq
665 aa
AA seq
DB search
MDIQNTIQNLREELNQHNYNYYVLDHPTISDYEFDLKLAQLQELEKQHPEFFDESSPTQR
VGGAITKNFETVVHEHRMYSLDNSYSKEDLLEWEKRIQKVLGDVPLEYTCELKYDGASIS
ITYMNGKLQRAVTRGDGFQGDDVTNNIKTIKSIPLQLKGNYPPKFDVRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSTEVAKRPLDCLLYFLIGNQLPFNTQFESLES
ARAWGFKAPKEAKLAKNLDEVFQFIDYWDTHRHNLPYETDGVVVKVNSFQHQEELGFTAK
SPRWAIAYKFKSEQVATRLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIAVDLAQRPLFTQPTYYITHCPECQTELVRSEGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFNNGLVRDYADLYELTVEQILPL
ERMAQKSAENLVNGVALSKNIPFERVLFALGIRYVGETVAKKLAKHYKNIDALRQASLMD
LILVDEIGERIAQSVIDFFDNQENQIIIERLKNYGVQFEIVEKINPNATDKLQGKTFVVS
GVFSLYSRDELKQAIEDNGGKVGSSISAKTDYVVAGDNMGPAKLDKANKLNIPIISEEDF
KAMIA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatattcaaaatacgattcaaaacttacgagaagaattaaatcaacacaactacaat
tactacgtgttagatcatcctactatttcggattatgagtttgatttgaaattggctcaa
ttacaagaattagaaaagcaacaccctgaattttttgacgaaagttctcctacacagcgc
gttgggggagctattactaagaactttgaaacggtggttcacgaacaccgaatgtattcc
ttagataattcgtattctaaagaagacttgttagaatgggaaaaacgaattcaaaaagta
ttgggtgatgttcctttggaatacacttgtgagttgaaatacgatggagcatcgattagt
attacatacatgaatggaaagttacaacgtgcagtcactcgtggtgatggttttcaagga
gatgatgtaacgaataatattaaaaccatcaaatcgattccgttacagctaaaagggaat
tatcctccaaaatttgatgtgcgaggcgaaattatcttgccttttgcaggttttgagaaa
atgaatcaagagttaattgaaattggagaaactccgtattctaaccctagaaatactgct
tctggaagtttgaagttacaagatagcaccgaagtggctaagcgtcctttagattgttta
ctttattttttaattggtaatcaattgccttttaatacccaatttgaaagtttagaatcg
gcaagagcttggggatttaaagcacccaaagaagcgaaattagccaaaaatttggatgaa
gtgtttcaatttattgactattgggatacgcatcgtcataatttgccgtatgaaacggat
ggagtagtagtcaaggtaaattcattccaacatcaagaagaattaggttttactgccaaa
tcgcctcgttgggcaatagcgtataaatttaaatctgagcaagtggctactcggttaaat
tccatttcttaccaagttggacgcacgggcgcaattacgcctgtagctaatttagaacct
gtacaattggcgggaaccattgtaaaacgggcttcgttgcacaatgccgatcaaattgaa
aaattagacattcgtgttggagatactgtttttgttgaaaaaggcggagaaataatccct
aaaattattgctgttgatttggcacaacgccctttatttacccagccaacgtattatata
acacattgtccagaatgtcaaaccgaattagtgcgtagcgaaggagaagccaatcattat
tgtcctaatttttatggttgtccaccacaaattattggccgaatccaacattatatttct
agaaaagcaatggatattgaagggcttggtggagaaacggtggctttattattcaacaat
ggtttggttcgtgattatgctgatttgtacgaattaacagtggagcaaatcttgcctttg
gaacgaatggctcaaaaatcagcggagaatttagtcaatggtgtggcactttctaaaaac
attccttttgagcgcgtgttgtttgctttaggaattcgttatgtgggagaaactgtagct
aagaaattagccaaacattataagaatattgatgcgttacgtcaagctagtttgatggat
ttgattttagttgatgaaataggagagcgtatagcacagagtgtgattgatttttttgac
aatcaagagaatcaaattattattgaaagactgaaaaactatggtgttcaatttgaaatc
gtagaaaaaatcaaccccaatgctacggataaattacaaggtaaaacctttgtggtttcg
ggagttttttcgttgtattcaagagacgagttgaaacaagctattgaagataatggcgga
aaagtagggagttctatttcggctaaaaccgattatgtagtagcaggtgacaatatggga
ccagcaaaactagataaggctaataaattgaacattccgattatctcagaagaagatttc
aaagcgatgattgcttaa
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