Flavobacterium kingsejongi: FK004_15940
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Entry
FK004_15940 CDS
T05683
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03030
DNA replication
fki03410
Base excision repair
fki03420
Nucleotide excision repair
fki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FK004_15940
03410 Base excision repair
FK004_15940
03420 Nucleotide excision repair
FK004_15940
03430 Mismatch repair
FK004_15940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fki03032
]
FK004_15940
03400 DNA repair and recombination proteins [BR:
fki03400
]
FK004_15940
Enzymes [BR:
fki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FK004_15940
DNA replication proteins [BR:
fki03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FK004_15940
DNA repair and recombination proteins [BR:
fki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FK004_15940
NER (nucleotide excision repair)
GGR (global genome repair) factors
FK004_15940
MMR (mismatch excision repair)
DNA ligase
FK004_15940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FK004_15940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
EcoRI
RNA_ligase
Zn_ribbon_Top1
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AWG26609
UniProt:
A0A2S1LSA4
LinkDB
All DBs
Position
complement(3507707..3509704)
Genome browser
AA seq
665 aa
AA seq
DB search
MEIQNKIQSLREELNLHNYNYYVLDMPTISDYDFDIKLKELQGLEEQYPEFFDANSPTQR
VGGAITKNFETVPHKTRMYSLDNSYSKEDLLDWEKRLQKNLGDVALEYVCELKYDGASIS
ITYENGKLKRAVTRGDGFQGDDVTNNIKTIRSIPLQLKGDYPDSFEIRGEIILPLEGFAK
MNQELIEIGETPYSNPRNTASGSLKLQDSAEVAKRPLDCLLYTFLGNDVRFATHFESLEK
ARSFGFKAPKETKLVKDMQGIFDFIDYWDVHRHDLPYETDGVVIKVNDLHLQEELGFTSK
SPRWAIAYKFKAEQVSTKLDAISYQVGRTGAITPVANLQPVQLAGTIVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIGVDFTQRSLDLLPTVYITNCPECQTALVRKEGEAQHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFNNGLIQNYADLYELTIDQVIPL
ERMAQKSAENLINGIEKSKQIPFESVLFALGIRYVGETVAKKLARHYKSIDNLAKATLMD
LILVDEIGERIAQSVVDFFENAENQLLIQRLKEYGVQLEMAQQKENASDKFAGKTFVVSG
VFSVYSRDELKNAIEDNGGKVGSSISAKTNYVIAGENMGPAKLEKAVKLNVPIISENDFI
QMLES
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggaaattcaaaataaaatccagtctttacgggaggaactcaacctccataattataat
tattatgtactggatatgcccacaatttcggattatgattttgatatcaaactgaaagag
cttcaggggcttgaggagcagtatccggagttttttgatgctaattctccaacacagcgt
gtgggcggtgcaatcactaaaaattttgaaacagttccccataaaacccgaatgtattcc
cttgataattcgtattccaaagaagacctgctggattgggaaaaacgactccagaagaat
ctgggggatgttgctttggaatatgtctgtgagctaaagtatgatggtgcctcgattagc
attacgtatgaaaatggcaaattgaaacgtgcagtaacacgtggtgatggttttcagggt
gatgatgtgacgaataatataaagacaatacgttccattccattacagctaaaaggcgat
tatccggacagttttgaaatccgtggtgaaatcatattgccgttggaggggtttgctaaa
atgaatcaggaactgatagaaattggtgaaactccctattccaatccccgaaatactgct
tccggaagccttaaactgcaggatagtgccgaagtggcaaaacgaccgcttgattgtctt
ttgtatacttttttaggtaatgatgtccgttttgcaacccattttgaaagtttggaaaaa
gcacggagttttggttttaaagctcccaaagaaacaaagttggtgaaagatatgcagggt
atttttgatttcattgactattgggatgttcaccgccatgacctgccgtatgaaaccgat
ggtgttgtgattaaggtcaatgatcttcatctgcaggaagagcttgggtttacgtcgaaa
tctccacgttgggcgatagcctacaaattcaaagcagagcaggtgtctacaaaattagat
gctatttcctatcaggtgggtagaactggtgctattacgcctgtggctaaccttcagcca
gtacaattagcaggaaccattgtaaaacgggcttcgcttcacaatgctgaccagatagaa
aaattagatatccgcgtgggagatactgtttttgtagagaaaggcggcgaaattattcca
aagattattggtgttgactttacacaacgatctttagaccttctgccgacagtatacatt
acgaattgcccggaatgccagacagctttggtgcgaaaagaaggggaggcacaacattat
tgtcctaacttttatggttgtccgccacagattataggccggatccagcattatatttcc
cgaaaagctatggatattgaagggctgggaggagagaccgtcgcattgttgtttaataat
ggcctgattcagaattatgctgatttatacgaacttacaatcgaccaggtgattccttta
gagcgtatggctcagaaatcggctgagaatttgatcaacggaattgaaaagtcgaagcaa
atcccattcgaaagtgtattgtttgctttggggattcgatatgttggagaaaccgtagcc
aaaaaactggcccgtcattataagagtattgataacctcgccaaagccacgctgatggac
ctgatcctggtggatgaaattggggaacgaatcgctcagagtgtagtggatttctttgag
aatgccgaaaatcaattacttatacagcgattgaaagagtatggggtgcaattggaaatg
gcacaacaaaaagaaaatgccagtgataaatttgcaggaaaaacttttgtagtgtccggt
gttttttctgtttattcaagagatgagcttaaaaatgcaattgaagataatggtggaaag
gtcgggagctctatttcggcaaagaccaattatgtgatagctggagaaaatatggggcct
gcaaaattggaaaaagcagtaaagctcaatgtcccgattatctcagaaaatgatttcatt
caaatgcttgagtcttaa
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