Flagellimonas sp. CMM7: LV704_16485
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Entry
LV704_16485 CDS
T08590
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
flb
Flagellimonas sp. CMM7
Pathway
flb03030
DNA replication
flb03410
Base excision repair
flb03420
Nucleotide excision repair
flb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV704_16485 (ligA)
03410 Base excision repair
LV704_16485 (ligA)
03420 Nucleotide excision repair
LV704_16485 (ligA)
03430 Mismatch repair
LV704_16485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flb03032
]
LV704_16485 (ligA)
03400 DNA repair and recombination proteins [BR:
flb03400
]
LV704_16485 (ligA)
Enzymes [BR:
flb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LV704_16485 (ligA)
DNA replication proteins [BR:
flb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LV704_16485 (ligA)
DNA repair and recombination proteins [BR:
flb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LV704_16485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LV704_16485 (ligA)
MMR (mismatch excision repair)
DNA ligase
LV704_16485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LV704_16485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
AphA_like
Auto_anti-p27
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
UII79246
LinkDB
All DBs
Position
3647947..3649944
Genome browser
AA seq
665 aa
AA seq
DB search
MTNQEKITILRDELRGHNYNYYVLDKPTISDYEFDVKLKELQKLEETHPEFYDATSPTLR
VGGEVTKNFETIQHEHRMYSLDNSYSKEDLEDWEKRIQRILGDVDVEFTCELKYDGASIS
LTYEEGKLVKAVTRGDGFQGDNVTTNIKTIKSVPLQLKGDYPSKFDIRGEIILTLEGFAK
MNQERLANGEEAYMNPRNTASGSLKLQDSALVAQRPLECLLYSITGKNLNIVSQFEVLDK
ARSWGFKVPTVAKLCKTTDDVMRFVDYWDVHRHDLPYETDGVVIKVNSLRHQEELGYTAK
APRWAMAYKFKAEQVSTVLHEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIAVDFTKRPSDSVPTTYIQHCPECNTELIRKEGEAQHF
CPNDTGCPTQITGRIQHFISRKAMDIEGLGGETVELLFKEGLIANYADLYSLTKEQVMPL
ERMAEKSAENLVNGVAASVAIPFERVLFGLGIRYVGETVAKKLAKAYKNIDALIIATEEE
LVTVDEIGGRIAESVVQFFAEPLNIEIVERLKLYGLQFSLSEEQLQNQSEKLKGQTFVVS
GVFESLGRTELKKLIEDNGGKVASSISSKTSFLVAGENMGPSKKTKAEGLGVPIISEQEF
LEKLD
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccaagaaaaaatcacaatccttagggatgaattaaggggacataattacaac
tattatgtgctggataaaccaacaatttcggattatgagtttgatgtaaaactgaaggaa
cttcagaaattagaagaaacacatccggagttttatgatgctacttctcctactttgaga
gttggtggagaggtgaccaaaaattttgaaaccattcaacacgaacatcgtatgtattct
ttggataattcttattctaaagaagacctagaggattgggaaaagcgaattcaacgtatt
ttgggagatgttgatgtggaattcacttgcgaactaaaatatgacggagcttctatcagt
ctaacctatgaagaagggaaattagttaaagcggtaacaagaggagatggttttcaagga
gataatgtaaccacgaacattaagaccataaaatctgtcccacttcagctaaaaggcgac
tacccatcaaaatttgacatacgtggtgagattattctaacactggaaggttttgccaaa
atgaaccaagaacgccttgccaatggcgaagaagcctatatgaatcctaggaatacagca
tcgggcagtttaaaattgcaagatagcgctttggtagcgcaacgccctttagaatgctta
ttgtacagtattaccggtaaaaacctgaatattgtttcccagtttgaagttctggataaa
gcacgttcttggggctttaaagtgcccactgttgcaaaattgtgcaaaactacggatgat
gtaatgcggtttgttgattattgggatgtacaccgtcatgatttgccttatgaaacagat
ggagtggttatcaaagtaaatagtttacgccatcaagaagaattgggttatactgctaag
gcaccgcgttgggctatggcctataaatttaaagctgagcaggtttcaacggtgctacat
gaaatcacttatcaggtagggcggacaggagctattacacctgttgctaacctagaaccg
gttttacttgccggcactactgtaaagagagcctctttgcacaatgcagatcagatagaa
aaattggatattagagtaggggatactgtttttgtagagaagggaggagagattattcca
aagattattgcagtggattttaccaaacgtccttcggactctgttccaaccacatatatt
cagcattgccccgaatgtaatacggaactgatacgcaaagagggagaggcacagcatttt
tgtccaaatgataccggttgcccaactcagataacaggtcgcattcagcattttatctcc
agaaaggcaatggatattgaaggtttgggtggtgaaactgttgaattgctttttaaagaa
gggttgatagcgaattatgcagatttatactccttgactaaagagcaggtaatgccactg
gaacgaatggcagagaaatctgcagagaacctggtcaatggagttgcagcttccgtagca
attccttttgagcgtgtgctgtttggtttgggaatacgctacgtaggcgagacagtagct
aaaaaacttgccaaggcctacaagaacatagatgccttgattattgcaacggaagaagaa
ctggtaactgttgatgagataggaggacgtattgctgaaagtgttgtacagttttttgca
gaacccttgaatattgagattgtggagcggttaaaattgtatggactacagttttcatta
tctgaagaacagctgcaaaatcaatctgaaaaactaaaggggcagacgtttgtggtttct
ggcgtttttgaatcccttggaagaacagaacttaaaaagctaattgaagacaacggtggt
aaagtggcttcatccatctcctccaaaacatcttttctggttgcaggtgaaaacatgggg
ccgagtaagaaaacaaaagcagaaggtttaggagtgccaattatttctgaacaagagttt
ttagaaaagttagattga
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