Ferribacterium limneticum: KI610_12705
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Entry
KI610_12705 CDS
T07599
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fle
Ferribacterium limneticum
Pathway
fle03030
DNA replication
fle03410
Base excision repair
fle03420
Nucleotide excision repair
fle03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KI610_12705 (ligA)
03410 Base excision repair
KI610_12705 (ligA)
03420 Nucleotide excision repair
KI610_12705 (ligA)
03430 Mismatch repair
KI610_12705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fle03032
]
KI610_12705 (ligA)
03400 DNA repair and recombination proteins [BR:
fle03400
]
KI610_12705 (ligA)
Enzymes [BR:
fle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KI610_12705 (ligA)
DNA replication proteins [BR:
fle03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KI610_12705 (ligA)
DNA repair and recombination proteins [BR:
fle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KI610_12705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KI610_12705 (ligA)
MMR (mismatch excision repair)
DNA ligase
KI610_12705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KI610_12705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UCV17679
LinkDB
All DBs
Position
complement(2640264..2642315)
Genome browser
AA seq
683 aa
AA seq
DB search
MVAPAVAVARAAELRAELERHNHAYYVLDAPSIPDAEYDKLFRELQGLESEYPELLTADS
PTQRVGGTPLKEFPSRQHGVPMLSLNNAFSPEEVEAFDKRVRDGLETIAAVDYAVEPKFD
GLAISLTYENGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLQGEGWPALIEIRGEVLMF
KADFAELNVRQRERGDKEFANPRNAAAGSLRQLDSKITASRPLSFFAYGVGAGADELAVR
THSELMDKLASWGFPVAAERAVVTGSHGQLEFFAKIGMLRPSLPYDIDGVVYKVNRLDWQ
ARLGFVSRAPRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTNAT
LHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAIVPEKRPTRDLFGGEPLHPPFELPKLCP
ECGSAVTRGIDEAIARCTGGLYCPAQRKQALWHYAARRAMDIEGLGDKIVDQLVDAGLVH
TPADLYGLTVETLAGLERMGEKSAQNLVAAIDQSRQTTLARFIFALGIRNVGEATARDLA
RHFGNLDGIIAADIEALQQVPDVGPIVAASIVTFFSESHNREIIAQLLAAGLHWTDGEPA
DAGPKLLAGKTLVLTGTLPTLKRDDAKAMIEAAGGKVAGSVSKKTDFVVAGEEAGSKLEK
ALELGVAVIDEAELLKLLEKGVQ
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggtggcacccgctgtggcggttgcgcgcgcggccgagttgcgcgccgaactggagcgc
cacaaccacgcctattacgtcctcgatgcgccaagtatcccggatgccgagtacgacaag
ctgttccgcgaactgcaggggctggaaagtgaatatccggaactgctgacggccgattcg
ccgacccagcgcgtcggcggtacgccgctcaaggaattcccgtcacgccagcacggcgtg
ccgatgttgtcgctgaacaacgcgttttcgccggaagaggtagaagccttcgacaagcgc
gtgcgtgacggcttggaaacgattgctgcggtcgactacgccgtcgagccgaaattcgac
ggcctggccatcagcctgacctacgaaaatggcgtgttcacctgtggcgccacgcgcggc
gacggggtgaccggcgaggaagtgacgcccaacctgcgcaccctgcgctgcattccgttg
cgtctgcaaggcgagggctggccggcgctgatcgagatccgcggcgaagtgctgatgttc
aaggctgatttcgccgaactcaacgtccgccagcgcgaacgcggcgacaaggaatttgcc
aacccgcgcaacgccgcggccggcagcctgcgccagcttgactcgaagatcacggccagc
cggcccttgtccttctttgcctatggcgtcggcgcgggggcggatgaactggccgtcagg
acgcacagcgaattgatggacaaactggcgagctggggcttcccggtggccgccgaacgt
gccgtcgtgaccggctcccacggtcaactggaatttttcgccaaaattggaatgttgcgg
cctagtctgccctacgacatcgacggcgtggtgtacaaggtcaatcgcctcgactggcag
gcgcgcctcggtttcgtctcgcgcgccccgcgtttcgccatcgcccacaaattcccggct
gaagaggcgttgaccgaagtgctcggcatcgacgtccaggttggccgcaccggcgccatt
accccggtcgcccggctcaagccagttttcgtcggcggcgtcacggtgaccaacgcaaca
ctgcacaacgaggacgaagtgcgccgcaaggatgtccgggtcggcgatacggtcatcgtt
cggcgggccggcgacgtcattcccgaagtcgtcgccatcgtcccggaaaaacggccgacg
cgcgacctgttcggcggcgagccgctgcatccgcccttcgaactgcccaagctttgcccg
gaatgcggttcggccgtgacgcgcggcatcgacgaagccatcgcccgctgtaccggcggc
ctctattgcccggcccagcgcaagcaggcgctgtggcactacgcggcgcgccgggcgatg
gacatcgagggcctcggcgacaagatcgtcgatcagctagtcgatgccggcctcgttcat
acgccggccgatctttatggtcttaccgtcgaaaccttggccgggctcgagcgcatgggc
gaaaagtcggcgcagaacctcgttgccgccatcgaccaaagccggcagacgacgctggca
cgcttcatcttcgcgctcggcatccgcaatgtcggcgaggccacggcgcgcgatcttgcc
aggcatttcggcaacctcgatggcataatcgcggccgatatcgaagcgctgcagcaggtg
cctgatgtcggcccgattgtcgcggccagcatcgtcactttcttcagcgagtcacataac
cgtgaaatcatcgcccagctgcttgccgccggcctgcactggacggacggcgaaccggcc
gatgccgggccaaagctgctggctggcaagaccctggtcctgactggcacgctgccgacg
ctcaagcgcgacgacgcgaaggcgatgatcgaagcagcgggcggcaaggtggcaggctcg
gtatcgaaaaaaaccgatttcgtggttgccggcgaggaagccggctccaagctggaaaag
gcattggagctgggcgtcgcggtgatcgatgaagccgaattgttgaaattgctcgaaaag
ggagtccaataa
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