Flammeovirga sp. MY04: MY04_1131
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Entry
MY04_1131 CDS
T04442
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
flm
Flammeovirga sp. MY04
Pathway
flm03030
DNA replication
flm03410
Base excision repair
flm03420
Nucleotide excision repair
flm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MY04_1131 (ligA)
03410 Base excision repair
MY04_1131 (ligA)
03420 Nucleotide excision repair
MY04_1131 (ligA)
03430 Mismatch repair
MY04_1131 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flm03032
]
MY04_1131 (ligA)
03400 DNA repair and recombination proteins [BR:
flm03400
]
MY04_1131 (ligA)
Enzymes [BR:
flm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MY04_1131 (ligA)
DNA replication proteins [BR:
flm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MY04_1131 (ligA)
DNA repair and recombination proteins [BR:
flm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MY04_1131 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MY04_1131 (ligA)
MMR (mismatch excision repair)
DNA ligase
MY04_1131 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MY04_1131 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HTH_45
AphA_like
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
ANQ48508
LinkDB
All DBs
Position
1:complement(1388113..1390134)
Genome browser
AA seq
673 aa
AA seq
DB search
MTFKEAEQRVEELSNQIHDLDKKYREGAPDISDQEFDIMMNELIQLESDYPELLKVTSPS
QRVGGEVSQNFENVAHAIPMLSLSNTYDKEDLTDFDDRIKKDINLDQVEYVCELKYDGVA
LSLTYENGILVRAVTRGDGVKGDDITKNARTIKSIPLQLTGEFPDILEVRGEVFMSKNSF
EENNLKISAENEIRRQKGNKEQPLLANPRNAAAGALKQLDPKKVAEKKLDMYAYQIASDY
EGITSHYDGLLRLKAWGFNIPDTFEINSDIDKVWDYITSWDQKRKDLPLETDGVVIKVNQ
MDLHKKLGNTAKSPRWAIAYKYKAEAAKTPLLSITYQVGRTGAITPVANLEPVQLAGTTV
RRASLHNANEIERLDLHYNDNVYVEKGGEIIPKITGVDKTSRREGATKVNYIENCPACNS
TLERKEGEAQHYCKNYECPPQIKGRIQHFVSRKAMNIDSLGGETIEQLISIGLIKDAGDL
YSLTEEKLSQLDRFKEKSINKLLSGIEESKNIPYEQVIFALGIRSVGSTISEKLAEVFTD
IDKLAEATEEEIAELYDVGSTVAVEVKKFFNSDVQLEFLNKLKSAGLKFKLEKQEVKDIL
ESKSFVCTGKFSIYSRNEMHALIKQNGGSVKTSISKNVDYLVAGEKAGSKLKKATELGIT
VLTEEEFSEMINN
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgactttcaaagaggcggagcaaagagttgaagaattatctaatcaaatacatgattta
gataaaaaatatagagaaggtgcacctgatatatcagatcaggaatttgatataatgatg
aatgaattgattcaattagaatcagattatccagaattattaaaagttacctcaccttct
caaagagtgggtggtgaagtatcccaaaactttgaaaatgtagcacacgcaattccaatg
ttatctttatcaaatacatatgataaagaagatctaactgattttgatgatagaattaaa
aaagatatcaatcttgatcaagtggaatatgtctgtgaacttaagtatgatggtgttgca
ctaagcctaacgtatgaaaatggtattcttgttagagcagttaccagaggtgatggtgtt
aaaggtgatgatattacaaaaaatgccagaacaattaagagtattcctctacagttgaca
ggtgaatttcccgatattcttgaagtgagaggagaggtgtttatgagtaaaaattccttc
gaagagaataatttaaaaatctctgcagagaatgagattcgtagacaaaaaggaaataaa
gaacagccattacttgctaatccaagaaatgccgctgcaggtgcacttaagcagttagat
cccaagaaagtcgctgagaaaaaattagatatgtatgcttatcaaattgcttcagattat
gagggtattacatctcactacgatggacttttaaggttaaaagcttgggggtttaatatt
ccagatacttttgaaatcaacagtgatatcgataaagtttgggattatatcacttcttgg
gatcaaaaaagaaaagatttacctcttgaaacagatggagtagttattaaggtaaatcaa
atggatttacataaaaaattaggtaacactgccaaaagtccaagatgggctattgcttat
aaatataaagctgaggcggcaaaaactccattattatctattacctatcaagtaggtaga
actggggcaattacaccagttgcaaatttagaacctgttcaattggcaggaactacggta
agaagagcatctctacataatgcaaacgaaatcgaaagactagatttgcattacaacgat
aatgtttatgttgaaaaaggaggtgagattatacctaaaattactggtgtagataaaaca
tctaggagggaaggagctacaaaagtcaattatattgaaaattgtcctgcatgtaattct
actttagaaagaaaagaaggagaagctcaacattattgtaaaaattatgagtgtccacca
caaataaaagggagaatccaacattttgtaagtagaaaagcaatgaatattgactcttta
ggtggtgagacaattgaacagcttattagtattggattaataaaagatgccggtgattta
tatagcttaacagaagaaaaactatcacaattagatcgttttaaagaaaagtctataaat
aaactgttgtcaggtattgaagaatctaaaaacataccatatgaacaagtcatatttgca
ctaggaattcgtagtgttggtagtacaatatcagaaaaattagcagaagtatttactgat
atagataagttagcagaagctactgaagaagaaattgctgaactttatgatgttggatct
actgttgcagttgaggttaaaaagttttttaattccgatgtgcaattagagtttttgaat
aaacttaaatcagctggtcttaaatttaaattagaaaaacaagaagtaaaagatatatta
gaaagcaagtcttttgtctgtacaggtaagtttagtatctattctagaaatgagatgcat
gctttaattaaacaaaatggaggaagtgtaaaaacttcaatatccaaaaatgttgattat
cttgttgcaggagagaaggctggttctaaattgaagaaagctaccgaattaggtattact
gttttaacggaagaagaattttctgaaatgataaacaactaa
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