Flavobacterium litorale: K1I41_11115
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Entry
K1I41_11115 CDS
T08396
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
flo
Flavobacterium litorale
Pathway
flo03030
DNA replication
flo03410
Base excision repair
flo03420
Nucleotide excision repair
flo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1I41_11115 (ligA)
03410 Base excision repair
K1I41_11115 (ligA)
03420 Nucleotide excision repair
K1I41_11115 (ligA)
03430 Mismatch repair
K1I41_11115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flo03032
]
K1I41_11115 (ligA)
03400 DNA repair and recombination proteins [BR:
flo03400
]
K1I41_11115 (ligA)
Enzymes [BR:
flo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1I41_11115 (ligA)
DNA replication proteins [BR:
flo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1I41_11115 (ligA)
DNA repair and recombination proteins [BR:
flo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1I41_11115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1I41_11115 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1I41_11115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1I41_11115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QYJ68070
UniProt:
A0ABX8V5E9
LinkDB
All DBs
Position
2439602..2441602
Genome browser
AA seq
666 aa
AA seq
DB search
MDILQQITTLRDELREHNHNYYVLDAPVITDFEFDQKLKELQELEAKHPEYFDADSPTQR
VGGSITKNFETIQHEHRMYSLDNGYSKEELQDWEQRVHKGLGTDNVTYTCELKYDGASIS
LTYEDGKLAKAVTRGDGFQGDEITNNVKTIRSVPLKLKGNYPERFEIRGEIILPLEGFAK
MNQELIEIGETPYSNPRNTASGSLKLQDSALVAKRPLDCLLYAMVGDNLPITSQFEGLEK
AREWGFKVPKEAKLATTIDEVFEFIDYWDTHRHELPYETDGVVVKVNNLNHQEELGYTAK
SPRWAIAYKFKAEQATTILHAITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIA
KLDVREGDTVFVEKGGEIIPKIIKVNFEKRPANSAKTKYITHCPECETALIRKEGEAQHY
CPNFYGCPPQIVGRIQHYISRKAMDIEGLGGETVALLFNNGLITNYADLYELKKEQVIPL
ERMAEKSAENLINGIEKSKEIPFERVLYALGIRYVGETVAKKLAKHYKNIDNLATATLMD
LVLVDEIGERIAQSVVDFFANEKNRELIDRLKTYGVQLEIQETEDTTVSNKLAGQTLVVS
GVFEKLSRNELKKAIEDNGGKVGSSISSKTNYVVAGANMGPAKLEKAEKLGIPIISEDDF
IAMINS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatattctgcaacaaataactacattacgcgatgaacttcgtgagcataaccataac
tattacgtgcttgatgcacctgttataacggactttgagtttgaccaaaaactaaaagaa
ctacaagagcttgaagcaaagcaccccgaatattttgatgccgactcccctacccaacgt
gtaggtggtagtattactaaaaatttcgaaacgatacagcacgaacaccgtatgtactcg
ttggataacggttactccaaagaggagttacaagattgggaacaacgcgtacacaagggg
ttgggtacagataatgttacttatacctgtgagttaaaatacgatggcgcatccattagt
ttaacctatgaggatgggaagttagccaaagccgttacacgtggcgatggtttccaaggg
gacgagattaccaataatgtaaaaaccatacgatctgtaccgttaaaacttaaaggaaac
taccctgagcgctttgagattagaggcgaaatcattttacctttagaaggtttcgctaaa
atgaatcaggaactcattgaaattggcgaaacaccctactccaacccccgtaatacagcg
tctggaagtttaaaactacaggatagcgcattagtagccaaacgtccgttagattgcttg
ttgtatgctatggtaggagataatttacctattacctcccaatttgaggggctcgaaaaa
gcacgcgaatggggttttaaggtgcctaaagaagctaaactcgctactactatagatgag
gtttttgaatttatagactattgggatacacaccgacacgaattaccttacgaaaccgat
ggcgtagtagttaaggtaaataaccttaaccatcaagaagaattgggctatacggcaaaa
tcgccccgatgggcaatagcctataagtttaaagccgagcaagccaccacaatattacac
gccataacgtatcaagtaggtcgtacgggtgctataacacccgttgctaacttagagcct
gtacaattggcaggtactatagtaaaacgtgcctctttgcataatgccgaccaaattgct
aaattggatgtacgcgaaggcgacaccgtatttgttgaaaaaggaggcgaaataatccca
aaaattattaaggttaattttgagaaacgccctgccaactctgccaaaacaaaatacata
acgcattgccctgaatgtgaaacggcattaatacgaaaagaaggcgaagcgcaacactat
tgccctaacttttacggatgccctccgcagatagtaggaagaatacagcactatatttcg
cgtaaagctatggatatagaaggtttgggaggcgaaacagttgctttgcttttcaataat
ggtttaattaccaattatgccgatttatacgaacttaaaaaggagcaagttataccgttg
gagcgtatggcagaaaaatcggcagagaacctcatcaatggcatcgaaaaatcaaaagaa
atacctttcgaaagggtattgtacgcattgggtattcggtatgtgggcgaaactgtagcc
aaaaagttagccaaacattacaaaaacattgataaccttgccaccgctacacttatggat
ttggtgctggtagatgaaattggcgaacgcattgcacagagcgttgttgacttttttgcg
aatgaaaaaaaccgagaacttattgacaggcttaaaacctatggcgtgcaacttgaaata
caggaaacagaagatactacagttagtaataagttggcaggtcaaacattggtcgtatca
ggcgtatttgaaaaactatcgcgtaacgaacttaaaaaagctatagaagataacggtggt
aaagtaggtagctctatatcctctaaaaccaactatgtggttgcaggcgccaatatggga
cctgccaagctagagaaagccgaaaaactagggatacccataataagtgaagatgatttt
attgcaatgataaacagctaa
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