Flavobacterium sp. WV_118_3: ABFU83_10265
Help
Entry
ABFU83_10265 CDS
T10639
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
flr Flavobacterium sp. WV_118_3
Pathway
flr03030
DNA replication
flr03410
Base excision repair
flr03420
Nucleotide excision repair
flr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABFU83_10265 (ligA)
03410 Base excision repair
ABFU83_10265 (ligA)
03420 Nucleotide excision repair
ABFU83_10265 (ligA)
03430 Mismatch repair
ABFU83_10265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flr03032
]
ABFU83_10265 (ligA)
03400 DNA repair and recombination proteins [BR:
flr03400
]
ABFU83_10265 (ligA)
Enzymes [BR:
flr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABFU83_10265 (ligA)
DNA replication proteins [BR:
flr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABFU83_10265 (ligA)
DNA repair and recombination proteins [BR:
flr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABFU83_10265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABFU83_10265 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABFU83_10265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABFU83_10265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
XBB74417
LinkDB
All DBs
Position
complement(2190757..2192754)
Genome browser
AA seq
665 aa
AA seq
DB search
MDVLQTIQALREVLNQHNYNYYVLDNPTISDYDFDLKLKELQALEEQYPEYFDEDSPTQR
VGGLVTKNFETILHEYRMYSLDNSYSKEDLLDWEKRAQKILGDVPLEYTCELKYDGASIS
ITYEDGRLKRALTRGDGFQGDDVTNNVKTIKAVPIRLKGDYPPKFEIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSSEVAKRPLDCLLYALVGQQLPFQSQFEGLEK
ARQWGFKVPKQAQLAQSMEEVFAFIDYWDTHRHTLPYETDGVVIKVNSLQYQDELGYTAK
SPRWAIAYKFKAEQVSTRLLSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRIGDTVFVEKGGEIIPKIIAVDETQRPVDSQPTIYITHCPECQTELVRKEGEAQHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLYNNGLVHDYADLYELTKEQVIPL
ERMAEKSADNLIKGIEKSKEVPFERVLFALGIRYVGETVAKKLAKHYKTIDALAQASLED
LVLVDEIGERIAQSVLEFFANEANKIIIERLRSFGVQLEMAAHHDTAVSELLLGKTFVVS
GVFEKFSRDELKKAIEDNGGKVGSSISKKTDYVVAGANMGPSKLEKASQLNIPIITEDDF
LLMLQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgttttacagactattcaggcgctgagagaagtattgaatcaacacaattataat
tattatgtgttggataacccaacaatctccgactatgatttcgacttgaaattaaaagaa
ttacaggcgcttgaagagcagtatccggaatattttgacgaagattcgccaacccagcgt
gtgggcggtttggtgacaaaaaatttcgaaacgattttacacgaataccgaatgtattcg
ctggacaattcgtattccaaagaagacttattggattgggaaaaaagagcgcagaaaatc
ctgggtgatgtcccgttggaatatacctgcgaattaaaatatgatggagcttccattagt
attacttatgaagatggaaggttaaaacgcgcccttacgcgtggcgacggttttcagggg
gatgatgtgaccaataatgttaaaacgataaaagccgtaccgatccgtttaaaaggggat
tatcctccgaaattcgaaattcggggggaaattattctgccgtttgcaggttttgaaaaa
atgaatcaggaattgatcgaaataggagaaacgccctattcgaatccgcgaaataccgca
tctggaagtctgaaattgcaggatagttccgaagttgcaaaaagaccgttggattgcctg
ttatatgcgcttgtgggacaacaattgccgtttcagtcgcagttcgaaggcttggaaaaa
gcacgtcagtggggttttaaagtgccaaaacaagcacaattggctcaaagtatggaagaa
gtttttgcgtttatcgattattgggatacacaccgccatacgttgccgtacgaaaccgat
ggtgtggtgatcaaggtaaatagtttgcaatatcaggacgaattggggtatacggcaaaa
tcaccgcgttgggcgattgcttataagtttaaagccgaacaggtgtcgacccgattgttg
tcgatttcctatcaggtaggacgaaccggagcgattacgccggtagccaatctggaaccg
gttcagttggccggaacgattgtaaaacgcgcttcgctacacaatgcggatcagatcgaa
aaactggatatccgaattggagatacggtgtttgtggaaaaaggcggcgagatcattcct
aaaattatcgctgttgatgaaacgcaacgcccggtcgattcacagcctactatttatatt
acgcattgtccggaatgtcaaaccgaattggtgcgaaaagaaggagaggcgcaacattat
tgtccgaatttctatggatgtccgccgcaaatcatagggcgaatccaacactacatctcc
cgaaaagctatggatattgaaggcttgggaggggaaacggtggctttattgtacaataac
ggactggtacacgattatgccgatttatacgaattgacgaaagagcaggtgattccgttg
gagcgaatggctgaaaaatcggccgataatttgatcaaaggaattgaaaaatccaaagaa
gtgccgttcgaacgggtgttgtttgcactgggaatccgttatgtgggagaaaccgtagct
aaaaaactggccaaacactataaaaccatcgatgcattggcacaggcaagtctggaggat
ttggttctggttgatgaaatcggagaacgaatcgcacagagtgtgctggaattttttgca
aacgaagctaataaaattatcatcgaacgattgcgaagttttggggtacaactggaaatg
gctgcgcatcacgatacggccgtttcggagctgttgttgggtaaaacgtttgtagtgtcc
ggtgtttttgaaaaattttccagagatgaacttaaaaaagcgatagaagataatggtgga
aaggtggggagttccatatcgaaaaaaaccgattatgtagtggccggagccaatatgggg
ccatcgaaattggaaaaagcgagtcagttgaatatcccgattatcacggaagatgatttt
ttgctaatgcttcaataa
DBGET
integrated database retrieval system
