Phnomibacter ginsenosidimutans: GLV81_01165
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Entry
GLV81_01165 CDS
T06320
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fls
Phnomibacter ginsenosidimutans
Pathway
fls03030
DNA replication
fls03410
Base excision repair
fls03420
Nucleotide excision repair
fls03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GLV81_01165 (ligA)
03410 Base excision repair
GLV81_01165 (ligA)
03420 Nucleotide excision repair
GLV81_01165 (ligA)
03430 Mismatch repair
GLV81_01165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fls03032
]
GLV81_01165 (ligA)
03400 DNA repair and recombination proteins [BR:
fls03400
]
GLV81_01165 (ligA)
Enzymes [BR:
fls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GLV81_01165 (ligA)
DNA replication proteins [BR:
fls03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GLV81_01165 (ligA)
DNA repair and recombination proteins [BR:
fls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GLV81_01165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GLV81_01165 (ligA)
MMR (mismatch excision repair)
DNA ligase
GLV81_01165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GLV81_01165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QGW26891
UniProt:
A0A6I6GW71
LinkDB
All DBs
Position
complement(281243..283375)
Genome browser
AA seq
710 aa
AA seq
DB search
MSFVLPHEIAHYTQLTSQWMQGEKSCNTSTSTEELRQVLRFHEHRYYVLNDPLIADVEYD
MLYKKLQAAEAAHPDWVTATSPTQRVGSSLNQGFETVSHLVPMLSLENSYNAEDLLDWDR
KARESSGLSTLEYCIEPKFDGASISVIFEHDQLSRSATRGDGVQGDDITVNSRQIRNMPL
TAAFSNFGIDTIEFRGEVLMSKKNFAAYNKKLAEEGIPPLANPRNAAAGSLRMKDPAEVG
KRNLEAFFYHVSYTTGKAAAGAPNLFAPAGTQALPTTHQGMLQMLWQCGFRSPVQEVKVV
QGIEAVIEHCAWFEAHRDDLPYEIDGLVIKINDLALQEKMGMTTHHPRWAIAYKFKARQA
TSTLQAVEFQVGRTGAVTPVAKIAPVHIGGVTVSSISIHNEDYIREKQLMIGDRVLVERA
GDVIPQIVRSQPEFRNGSEQAIRFPTECPVCNSSLFKEEGEAVWRCVNAECPAQSVERII
HFVSKDAMDIKSFGEQQVRRFYELGLMQDIPGLYQLDFGSIASLDGFGKKSITNLESSIE
QSKQQPLHRLIYALGIRHVGETMAKTLARSVKHLMELQHKSVDDLMQLEDIGPKVAGSIV
QFFGNAQNIHMLQQLEALGISMQASEISQPVAGNLSGKTFLFTGTLSKFKRSEAETMVEA
KGGQILGGVSSKLNYLVVGEDAGSKLEKAKKIPSISILSEDEFLAMMEAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgtactacctcacgaaattgcccattacacgcagcttaccagccagtggatg
caaggcgaaaaatcctgcaataccagtacttcaacggaggaattgcgacaggtactgcgg
tttcatgagcaccgctactatgtactcaacgatccgctgattgccgatgtggaatacgac
atgctgtacaaaaaactgcaagcggccgaagcagcacatcccgattgggtaacggccaca
tcgcctacgcagcgggtgggcagcagcctcaaccagggctttgaaaccgtgagccacctg
gtacccatgctgagtttggaaaacagttacaatgctgaagacttactggattgggaccgc
aaagccagagaaagctcaggcctcagcaccttggaatattgcatcgaacccaagtttgac
ggcgctagcatctccgtcatttttgaacacgaccagctcagccgtagtgccacccgtggc
gatggagtgcagggcgatgacataacggtaaactcccgccaaatcaggaacatgccactc
acggcagccttctccaacttcggcattgacaccatagaatttcgcggtgaagtgctgatg
agcaagaaaaactttgcagcctacaacaaaaaactggccgaagaaggcatccccccgttg
gccaacccccgcaatgccgctgcgggttcgctccgcatgaaagaccccgcagaagtgggc
aagcgcaacctagaagctttcttttaccacgtaagttataccacgggcaaagcagctgcc
ggtgccccgaatttatttgcgccagcaggtacacaagcattgcctactacgcaccagggc
atgctgcaaatgctgtggcagtgcggctttcgcagccccgtgcaagaagtgaaagtggtg
caaggcattgaagccgtgatagaacactgcgcctggtttgaagctcaccgcgacgacctg
ccctacgaaatagacggactggtgattaaaataaacgacctggccttgcaggaaaaaatg
ggcatgaccacccatcatccaaggtgggccatagcgtataaattcaaagccaggcaggct
accagcaccttgcaggcggtagagtttcaggtgggaagaacaggtgctgtaacacctgta
gccaaaatagcacccgtgcatattggcggcgttacagtgagcagcatcagcatacacaac
gaagactacatacgggaaaaacaactcatgattggcgaccgggtgctggtagaaagagcc
ggcgatgtaattccgcaaattgtacggtcgcagccagagtttagaaatggcagcgaacaa
gccattcgttttcctaccgaatgccccgtgtgcaatagcagtttgtttaaagaagaaggc
gaagccgtatggcgttgtgtaaatgccgaatgcccggcacaatcggtagaacgcatcatt
cactttgtgagtaaagatgcgatggatattaaaagctttggcgagcagcaagtgcgtcgt
ttctacgagcttggattgatgcaggatattcccggattgtaccaattagatttcggtagc
attgcgagccttgatggttttgggaaaaagtcaatcaccaatctggaaagctccattgag
caatcgaagcaacagccactgcaccggctgatttatgcgttgggcattcgccacgtgggt
gaaaccatggccaaaacactggcccgctccgtaaaacatttaatggagctgcaacataaa
tctgtggacgatttaatgcagctggaagacattggccccaaagtagcaggcagcattgta
cagttttttggcaatgcgcaaaacatacacatgctgcagcaactggaagcattgggcatt
agtatgcaggcatcagaaatcagccaacctgtagcaggcaacctgagtggcaaaaccttt
ttgtttaccggtacgttatctaaattcaagcgtagtgaggcagaaaccatggtagaagcc
aaaggcggacaaatactgggtggcgtaagcagcaagctcaactacctggtagtaggcgaa
gatgccggcagcaagctggaaaaagccaaaaaaattccgagcatcagcattctttctgaa
gatgaatttctggccatgatggaagccgaataa
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