Candidatus Fluviicola riflensis: CHH17_11005
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Entry
CHH17_11005 CDS
T05019
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03030
DNA replication
flu03410
Base excision repair
flu03420
Nucleotide excision repair
flu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHH17_11005
03410 Base excision repair
CHH17_11005
03420 Nucleotide excision repair
CHH17_11005
03430 Mismatch repair
CHH17_11005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flu03032
]
CHH17_11005
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_11005
Enzymes [BR:
flu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CHH17_11005
DNA replication proteins [BR:
flu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHH17_11005
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CHH17_11005
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHH17_11005
MMR (mismatch excision repair)
DNA ligase
CHH17_11005
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CHH17_11005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
Zn_ribbon_Top1
RNA_ligase
TnpW
Motif
Other DBs
NCBI-ProteinID:
ASS49247
LinkDB
All DBs
Position
complement(2553299..2555308)
Genome browser
AA seq
669 aa
AA seq
DB search
MNPQEAQQRITFLTDELNHHNHLYYVESNPVISDFEFDRLLRELQELETQFPELASPLSP
TKRVGGDITKKFATVVHRFPMLSLSNSYSEEEIIDWAQRLKKAVESPIEYVCELKYDGVA
IGIRYVNGKFDRAVTRGDGTRGEDISTNVKTIRSIPLTLKGDYPDDFEIRGEIFFPKANF
EAMNRRREEIGEPVFANPRNSASGTLKSQDSKVVAERGLDCFLYGVYGESLRLESHLESV
NTAKEWGFKVPLEKEKYIAKTDNITGIMDFIHYWDKARYDLPFDIDGVVIKVNDYIQQQD
LGFTAKSPRWAIAYKFKAERVETVLQTVTYQVGRTGAITPVANLTPVLLGGTVVKRASVH
NADQIEKLGLHEGDTVYVEKGGEIIPKIIGVNLEKRSESTKEVVFIDNCPECGTLLVRRE
GEAQHYCPNDQVCPPQVKGRMEHFISRKAMNIDGLGAETIDLLYQKGLARTVADLYDLTF
DQVVNLDRMADRSANNLLLGIEASKAVPFERVLFALGIRFVGETVAKKLAAAFKNIDAIA
TATFEELIAVDEIGDKIAVAVQQYFADERAQETIARLKIAGLQFEIEEAELDSTSLEGKT
FVVSGVFSQFSRDEIKSLIEKNGGKNVSSISAKTSYVLAGDNMGPAKLEKASSLGIPIIS
EADFVKMLG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgcaggaagctcaacaacgaatcacctttttaaccgacgaactcaatcaccat
aatcacttgtattatgtggaaagtaatccggtaatctctgattttgagtttgatcgcttg
ctgcgcgagttacaggaactggaaacgcaattccccgaattggcttcaccgttgagtcca
accaagcgggtaggaggcgatatcaccaagaaatttgcaactgtcgtgcatcgtttccct
atgctttcgctttccaattcgtactccgaagaagaaatcatcgattgggcacagcgcctg
aaaaaagcggtcgaaagcccgatagaatacgtttgtgaactcaaatacgatggtgtggca
attgggattcgttatgtgaacggaaagtttgatcgggccgtaacacgcggtgatggcacg
cgaggtgaagatatttcaaccaacgtaaaaaccattcgcagtattccgcttacgctgaaa
ggtgattatccggatgattttgagatcagaggcgaaattttcttcccgaaagccaacttc
gaagccatgaatcgccgccgggaagaaattggtgaacccgtttttgcaaatcctcgaaac
tcagcttccggaacgcttaagtcacaggattcgaaagtggtggccgaacgcggtttggat
tgttttctctatggtgtttacggcgaaagtttgcgattggaatcacatttggaaagtgtc
aataccgccaaagaatggggattcaaagttccgctggaaaaagaaaagtacatcgccaaa
accgataacatcaccggaatcatggactttattcactattgggataaagcgcgttacgac
ctgccattcgatatcgatggtgttgtgatcaaagtcaatgattatattcagcaacaggac
ctcggtttcaccgccaaatcaccgcgttgggccattgcgtataaattcaaagccgagcgg
gtagaaaccgttttgcaaaccgtcacttaccaggttggacgaaccggcgcaattactcct
gttgccaatctgacacctgtattgctgggcggaacggtcgtgaaacgtgcctcggttcac
aatgctgatcaaattgaaaagctcggactgcatgaaggcgataccgtttacgtggaaaaa
ggaggtgagatcatcccgaaaattattggcgtaaacctcgaaaaacgttccgaatccaca
aaagaagtcgtgtttattgacaattgtccggaatgcggaacattactggtccgcagagaa
ggcgaggcacagcattattgtcccaacgaccaggtttgtccgccgcaggtgaaaggccgc
atggaacattttatcagccggaaagctatgaatatagatggtttaggcgctgaaactatt
gatttattgtaccagaaaggattggcacgcaccgtagccgatttgtacgatttaaccttt
gatcaggtagtaaatttggatcgaatggctgatagatcggcgaataatcttttattggga
attgaggcatcaaaagccgttccgtttgagcgtgttttatttgcactcggaattcgtttt
gtgggtgaaaccgttgctaaaaaactagccgcagctttcaaaaacattgatgctattgcc
actgctacgtttgaagaattgatagccgttgatgagattggcgacaaaatcgcagtggcc
gtgcagcaatattttgccgatgaacgagcgcaggaaacaattgcacgtttaaaaatagcc
ggtttgcaattcgagatcgaagaagcggaacttgattctacctcgttggaaggaaaaact
ttcgtggtttctggtgttttcagccagtttagtcgcgacgagatcaaatctctgatcgag
aaaaacggtggtaaaaatgtcagttccatttccgcaaaaacatcctacgttctcgcagga
gataatatggggccagctaaattggaaaaagccagttcgctcggtattccgatcatttca
gaagccgattttgtgaagatgctgggatag
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integrated database retrieval system
