Flavihumibacter rivuli: KJS94_11630
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Entry
KJS94_11630 CDS
T08011
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
flv
Flavihumibacter rivuli
Pathway
flv03030
DNA replication
flv03410
Base excision repair
flv03420
Nucleotide excision repair
flv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KJS94_11630 (ligA)
03410 Base excision repair
KJS94_11630 (ligA)
03420 Nucleotide excision repair
KJS94_11630 (ligA)
03430 Mismatch repair
KJS94_11630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flv03032
]
KJS94_11630 (ligA)
03400 DNA repair and recombination proteins [BR:
flv03400
]
KJS94_11630 (ligA)
Enzymes [BR:
flv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KJS94_11630 (ligA)
DNA replication proteins [BR:
flv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KJS94_11630 (ligA)
DNA repair and recombination proteins [BR:
flv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KJS94_11630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KJS94_11630 (ligA)
MMR (mismatch excision repair)
DNA ligase
KJS94_11630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KJS94_11630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
IMS_HHH_1
Motif
Other DBs
NCBI-ProteinID:
ULQ55292
LinkDB
All DBs
Position
2719119..2721209
Genome browser
AA seq
696 aa
AA seq
DB search
MYNANETHHLQQLTHTLLKELPTIPEKEIEGLRDVLRFHEYRYYVLDEPMIADYEYDQLY
KALERLEKDSPGRITPDSPTQRVARGLNPSFPTVDHLVPMLSLDNSYNAEDLIDWDRRVR
EGAGIKEVEYCVEPKFDGASISLIYDDDLLARGATRGDGVQGDDITTNIRQIRSVPLSAR
FSDYGIQQIEIRGEVLLSKKHFKAFNEKLAEQNLPPLANPRNAASGSLRIKDPEEVRRRN
LEAFLYHVSYHTDSGKPHHALDTHAGTLKMLWDLGFRSPEKEKKIFRGIEGVIDYCLRFE
AERDDLPYEIDGMVIKVNDIALQEKLGMTTHHPRWAIAFKFKARQATSKLRAVEFQVGRT
GSITPVAKIDPVPIGGVTVSSVSLFNEDVIREKDLMIGDQVLVERAGDVIPYIVKSIAEA
RNGHEHPIQFPHKCPVCHTQLYKEEGEAVWRCVNIECPAQVVERIIHFVSKDAMDINGFG
EANVRKFYELGFLTDIPSIYRLPFDMIRGLEGFGEKSITKLQEAIEKSKGQPLHRLIFAL
GIRYVGETTAKTLAQSVENIYDFAGMSLEELQQMEDVGVKVANSIYHFFHNKGNLDLLKD
LEELGLTMKSEKKSSIASGNLAGQTFLFTGTLNRLKRSEAEAMAEAQGGKILSGVSSKLN
YLVVGEDAGSKLEKAKKIPSIHIITEEEFLDLVGNG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtataacgctaacgaaacgcatcatttacaacaacttacccatacattactgaaggaa
ttacccactatcccggagaaggagatcgaaggcctgagggatgtactccgcttccatgaa
taccggtattatgtgctggatgaaccgatgattgcggactatgaatacgaccagctctat
aaggcccttgaaaggctggaaaaagattccccgggacgcattaccccagatagcccgacc
caaagggtggccaggggacttaatccctccttccctactgtagaccacctggtgccgatg
ttgtcgctggacaacagttataacgcggaagacctcattgattgggaccggagggtgagg
gaaggtgccggtatcaaggaggttgagtactgcgtagagcccaagttcgatggggccagt
atttcactgatctatgacgacgacctgctggcaaggggcgctaccaggggcgatggtgtg
cagggggatgatatcaccaccaatatccgacagatccgttccgttccgctatcagcaagg
ttttcggactatggcatccaacaaattgagatcaggggtgaagtgttgttgagtaagaag
catttcaaggccttcaacgaaaaactggccgagcaaaaccttccgccactggccaatcca
cggaacgcggcctccggttccctgcgcatcaaggacccggaagaagtgaggaggcgtaac
ctggaagcctttctttaccacgtcagctaccatacagattcaggtaaaccgcatcatgcg
ctggacacccatgcaggaaccctgaaaatgctttgggacctgggtttccgcagccccgaa
aaagagaagaagatcttcaggggaatcgaaggagtgattgactactgcctgcggttcgag
gccgaacgcgatgacctgccttacgagatagatggcatggtgatcaaggtgaatgatata
gccctgcaggaaaagctgggcatgaccacccaccacccccgctgggccatcgccttcaag
ttcaaggccaggcaggctaccagcaagttgagggctgttgaattccaggtgggcaggaca
gggtccatcacaccggtggccaagatagatcctgtacccattggcggggttaccgtatcc
tcggtttccctcttcaatgaggatgtcatcagggaaaaggacctgatgatcggtgaccag
gtattggtggagcgggcaggtgatgtgatcccttacatcgtgaaatcaatagccgaagcc
cgtaacggtcatgaacacccgatacagttcccccataaatgccctgtatgccatacccag
ctgtacaaggaagaaggggaagccgtttggcgctgtgtaaatattgagtgtccggcacag
gtagtggagcggatcatccattttgtgagcaaggatgccatggacatcaatggcttcggg
gaagccaatgtgaggaagttctatgaactgggctttctaactgatattccctccatctac
cgccttcccttcgatatgatcaggggactggaaggttttggtgagaagtcgatcaccaag
ctgcaggaggccattgaaaagtcaaagggccagcctttgcaccgattgatctttgccctc
ggtatccggtatgtgggggaaaccacggccaagaccctggcacagtcggtggagaatatc
tacgacttcgccggtatgagcctggaagaactgcagcaaatggaagatgtaggcgtgaag
gtggccaatagtatttaccatttcttccacaataagggcaacctcgacctgctgaaggac
ctggaagagctgggcctgaccatgaagagcgagaaaaaaagcagtatcgcttccggcaac
ctggccggacagaccttcctattcacgggcacccttaaccgattgaagcgcagtgaggcg
gaagccatggcggaagcccagggtggcaagatcctgagcggggtcagcagcaagctaaat
tatcttgtggtaggtgaagacgcaggctccaaactggaaaaagcgaagaagatccccagc
atccatatcattaccgaagaagaatttttggacttagtgggtaacggttaa
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