Fomitiporia mediterranea: FOMMEDRAFT_103881
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Entry
FOMMEDRAFT_103881 CDS
T03132
Name
(RefSeq) LigT-like protein
KO
K15435
2',3'-cyclic-nucleotide 3'-phosphodiesterase [EC:
3.1.4.37
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fme03016
]
FOMMEDRAFT_103881
Enzymes [BR:
fme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.37 2',3'-cyclic-nucleotide 3'-phosphodiesterase
FOMMEDRAFT_103881
Transfer RNA biogenesis [BR:
fme03016
]
Eukaryotic type
tRNA spricing factors
Other tRNA splicing factors
FOMMEDRAFT_103881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPDase
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-GeneID:
18669980
NCBI-ProteinID:
XP_007263846
JGI:
Fomme1_103881
LinkDB
All DBs
Position
Unknown
AA seq
204 aa
AA seq
DB search
MRLLLGIALWIVPPEPAATQLKQLMRIPSSLDPLPSCTLPSFEPHITLSSFPSSVPLELL
RSVLGEIKQTNARPLRVEFTGFGTGDTFFRSVVIDVLVTPELQDVHDRVQRAVRMNGYEV
SSPRFPHISLFYIPDEFGAERKRIRDALWETCGIQCGLDYPGRMIAFKVSEGVFSGFDTF
EVWIVRCEGPVEGWEVLEKVELAG
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgttgttaggaatagctctttggatcgttcccccagagccagctgcaacacag
ttaaagcagctgatgcgcattccatcatcgcttgatccactaccatcttgcaccttacct
tctttcgaaccacatatcacgctctcaagcttcccaagttccgtaccactcgagcttcta
cgctcagtgctcggcgagattaagcaaaccaatgcaaggcctttgcgtgtggagtttact
ggttttgggacaggagacacgttcttccgctcggtcgttattgacgttttggtcacgcct
gagttgcaagacgtgcacgatcgcgttcagcgggctgtgagaatgaatgggtacgaagtg
tctagtccgaggttcccgcatatttcgttgttttacattccggatgaatttggtgcggag
aggaagagaataagggatgctttgtgggagacatgtggcatacagtgtggtttggactac
ccagggcggatgattgcgtttaaagtcagtgagggagtgtttagtgggtttgatactttt
gaggtgtggattgtacggtgtgaagggcctgttgaagggtgggaggtgctcgagaaggtt
gagcttgctggataa
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